Overview of HPV Mutation, Integration-Cistrome Factor Overlap and Target gene

Human Papillomavirus Virus (HPV) is a DNA virus from the papillomavirus family. Over 170 types have been described. More than 40 types may be spread through sexual contact and infect the anus and genitals. People can become infected with more than one type of HPV. HPV affects only humans.
Size: ～7904 nucleotides [RefSeq: AF125673.1]
Encoding: E5, E6, E7, L1, L2 and so on
Human Disease: Infection with HPV can lead to Head and neck squamous cell carcinoma, Cervical carcinoma, etc. Click here to see all HPV associated human diseases.

Click the blue font on the page to view detailed information.
The cistrome refers to "the set of cis-acting targets of a trans-acting factor on a genome-wide scale."

HPV Mutation Info

Click here to see all HPV Mutation Sites

ID	PMID	Mutation	Gene/Protein/Region	Description	Detail
1	32304786	I117F	L1	G R S I C	View
2	32304786	A137S	L1	G R S I C	View
3	32304786	N138K	L1	G R S I C	View
4	32304786	G140R	L1	G R S I C	View
5	32304786	N143K	L1	G R S I C	View
6	32304786	C146G	L1	G R S I C	View
7	32304786	S118C	L1	G R S I C	View
8	32304786	L119S	L1	G R S I C	View
9	32304786	T129S	L1	G R S I C	View
10	32304786	S133C	L1	G R S I C	View
11	32304786	S133T	L1	G R S I C	View
12	32304786	R258I	L1	G R S I C	View
13	32304786	V267L	L1	G R S I C	View
14	32304786	V267A	L1	G R S I C	View
15	32304786	E269A	L1	G R S I C	View
16	32304786	E269D	L1	G R S I C	View
17	32304786	Y291S	L1	G R S I C	View
18	32304786	T350S	L1	G R S I C	View
19	32304786	T354I	L1	G R S I C	View
20	32304786	K356Q	L1	G R S I C	View
21	32304786	K356T	L1	G R S I C	View
22	30008422	T254 N	E2	G R S I C	View
23	30008422	F271V	E2	G R S I C	View
24	30008422	W341C	E2	G R S I C	View
25	30008422	G3778T	E2	G R S I C	View
26	30008422	T3566G	E2	G R S I C	View
27	30008422	T3517C	E2	G R S I C	View
28	30008422	S274A	E2	G R S I C	View
29	30008422	T3575G	E2	G R S I C	View
30	29945151	G694A	E7	G R S C	View
31	30008422	I211T	E2	G R S C	View
32	30008422	P208A	E2	G R S C	View
33	30008422	N203D	E2	G R S C	View
34	30008422	L157I	E2	G R S C	View
35	30008422	A143T	E2	G R S C	View
36	30008422	E142D	E2	G R S C	View
37	30008422	H35Q	E2	G R S C	View
38	30008422	G3507T	E2	G R S C	View
39	30008422	G3272A	E2	G R S C	View
40	30008422	G3307T	E2	G R S C	View
41	30008422	T3274G	E2	G R S C	View
42	30008422	T3205C	E2	G R S C	View
43	30008422	T3258A	E2	G R S C	View
44	30008422	T3805G	E2	G R S C	View
45	30008422	T3706C	E2	G R S C	View
46	30008422	T3694A	E2	G R S C	View
47	30008422	T3664C	E2	G R S C	View
48	30008422	A3538C	E2	G R S C	View
49	30008422	C3516A	E2	G R S C	View
50	30008422	T3387C	E2	G R S C	View
51	30008422	C3377G	E2	G R S C	View
52	30008422	A3362G	E2	G R S C	View
53	30008422	T3224A	E2	G R S C	View
54	30008422	G3182A	E2	G R S C	View
55	30008422	A3181C	E2	G R S C	View
56	30008422	C2860A	E2	G R S C	View
57	29981762	K8T	E6	G R S C	View
58	29981762	S129N	E6	G R S C	View
59	29981762	C53F	E6	G R S C	View
60	29981762	L21T	E6	G R S C	View
61	29981762	T19I	E6	G R S C	View
62	29981762	E82D	E7	G R S C	View
63	29981762	E74D	E7	G R S C	View
64	29981762	K61N	E7	G R S C	View
65	29981762	E6A	E7	G R S C	View
66	29981762	R5Q	E7	G R S C	View
67	29981762	G832T	E7	G R S C	View
68	29981762	G808T	E7	G R S C	View
69	29981762	A769C	E7	G R S C	View
70	29981762	A718C	E7	G R S C	View
71	29981762	A603C	E7	G R S C	View
72	29981762	G600A	E7	G R S C	View
73	29981762	A497G	E6	G R S C	View
74	29981762	G487A	E6	G R S C	View
75	29981762	T482C	E6	G R S C	View
76	29981762	T341C	E6	G R S C	View
77	29981762	A284C	E6	G R S C	View
78	29981762	G259T	E6	G R S C	View
79	29981762	T163C	E6	G R S C	View
80	29981762	T162A	E6	G R S C	View
81	29981762	C157T	E6	G R S C	View
82	29981762	C134T	E6	G R S C	View
83	29981762	A124C	E6	G R S C	View
84	29945151	G261C	E6	G R S C	View
85	29945151	G761A	E7	G R S C	View
86	29695285	A7304G	LCR	G R S C	View
87	29568922	G6454T	L1	G R S C	View
88	29568922	T6469G	L1	G R S C	View
89	29568922	T6586G	L1	G R S C	View
90	29568922	A6607G	L1	G R S C	View
91	29568922	T6733C	L1	G R S C	View
92	29568922	C6826T	L1	G R S C	View
93	29568922	A6845C	L1	G R S C	View
94	29568922	A6868C	L1	G R S C	View
95	29568922	G6880A	L1	G R S C	View
96	29568922	Q77H	E7	G R S C	View
97	29568922	Q77Y	E7	G R S C	View
98	29568922	A5620C	L1	G R S C	View
99	29568922	A583T	L1	G R S C	View
100	29568922	A7020G	L1	G R S C	View

HPV Overlap Info between Viral Integration Fragments and Cistrome Factors

Click to see statistics heatmap of VIS-Factor Overlap in the human genome of HPV

Click to see histogram of VIS-Factor Overlap by chromosome of HPV

Click to see the overlap count of three factors and HPV intergration fragments on the human chromosomes

Only show 100 info Click here to see all HPV Integration Sites

DVID	Chromosome	Histone Modification	Transcription Factor Binding Site	Chromatin Accessibility	Sum of Overlapped Records	Detail
5201955	chr1	3861	2799	1704	8364	View
5000052	chr1	3679	2585	1312	7576	View
5000050	chr1	3624	2491	1281	7396	View
5000039	chr1	2140	1554	1635	5329	View
5000094	chr1	1585	675	777	3037	View
5201742	chr1	654	1831	348	2833	View
5400052	chr1	634	1808	357	2799	View
5400429	chr1	2267	205	246	2718	View
5400824	chr1	714	1737	200	2651	View
5000092	chr1	2405	92	147	2644	View
5000103	chr1	217	1084	1023	2324	View
5401500	chr1	182	1127	987	2296	View
5201731	chr1	464	1550	274	2288	View
5000107	chr1	241	1043	970	2254	View
5000108	chr1	154	1056	981	2191	View
5000109	chr1	154	1054	981	2189	View
5000110	chr1	255	1012	905	2172	View
5000116	chr1	268	884	812	1964	View
5000130	chr1	11	772	784	1567	View
5400039	chr1	267	1016	208	1491	View
5400053	chr1	261	969	242	1472	View
5400051	chr1	397	871	62	1330	View
5000148	chr1	264	347	513	1124	View
5201839	chr1	147	768	115	1030	View
5201389	chr1	228	319	450	997	View
5000165	chr1	176	491	279	946	View
5000231	chr1	150	259	302	711	View
5000190	chr1	203	151	340	694	View
5000192	chr1	11	550	130	691	View
5401212	chr1	261	407	18	686	View
5401394	chr1	39	54	567	660	View
5000195	chr1	646	12	1	659	View
5000196	chr1	631	23	5	659	View
5201752	chr1	203	359	97	659	View
5300270	chr1	635	11		646	View
5000209	chr1	228	211	156	595	View
5000208	chr1	339	117	137	593	View
5402033	chr1	99	280	198	577	View
5000218	chr1	471	84	4	559	View
5402684	chr1	502	14	12	528	View
5401982	chr1	437	45	5	487	View
5000236	chr1	443	38	4	485	View
5404890	chr1	437	44	4	485	View
5404446	chr1	448	31	4	483	View
5000238	chr1	450	21	4	475	View
5000239	chr1	166	180	129	475	View
5404976	chr1	423	47	5	475	View
5500049	chr1	318	104	27	449	View
5000253	chr1	382	31	19	432	View
5000254	chr1	103	144	182	429	View
5000259	chr1	305	59	56	420	View
5400845	chr1	13	133	269	415	View
5000266	chr1	320	56	31	407	View
5200486	chr1	9	359	21	389	View
5404919	chr1	149	220	1	370	View
5000292	chr1	144	150	59	353	View
5402918	chr1	337	7		344	View
5404445	chr1	290	47	7	344	View
5201024	chr1	313	26	3	342	View
5000304	chr1	335	2	1	338	View
5000307	chr1	77	70	188	335	View
5000311	chr1	193	65	69	327	View
5201511	chr1	87	52	188	327	View
5000315	chr1	37	61	226	324	View
5404920	chr1	127	184	1	312	View
5000334	chr1	288	9		297	View
5000344	chr1	196	21	71	288	View
5403550	chr1	21	164	95	280	View
5000369	chr1	221	21	25	267	View
5000376	chr1	10	87	156	253	View
5000380	chr1	246	3		249	View
5404974	chr1	175	66	7	248	View
5000383	chr1	188	17	42	247	View
5402865	chr1	215	13	13	241	View
5200380	chr1	58	145	32	235	View
5300146	chr1	13	162	59	234	View
5000410	chr1	66	85	72	223	View
5000412	chr1	217	5		222	View
5000417	chr1	197	21	2	220	View
5402529	chr1	157	52	7	216	View
5404696	chr1	203	7	4	214	View
5000427	chr1	184	7	22	213	View
5402520	chr1	135	55	7	197	View
5000454	chr1	175	4	13	192	View
5200085	chr1	183	1	3	187	View
5000461	chr1	173	4	8	185	View
5000463	chr1	19	92	73	184	View
5401954	chr1	177	4		181	View
5300199	chr1	148	28	3	179	View
5402241	chr1	166	4		170	View
5000483	chr1	49	85	34	168	View
5402034	chr1	164	4		168	View
5000488	chr1	64	52	51	167	View
5401931	chr1	163	4		167	View
5201015	chr1	124	34	4	162	View
5400167	chr1	144	14	2	160	View
5000510	chr1	98	40	19	157	View
5200864	chr1	48	80	27	155	View
5400841	chr1	141	12	2	155	View
5201827	chr1	23	64	64	151	View

HPV Target Gene Info

Click to see correlation between gene expression and proportions of infiltrating immune cells of HPV

Only show 100 info Click here to see all HPV Target Gene

ID	Target gene	Virus	Gene Function	Literature Count	Detail
1	UNC5C	HPV	Suppressor gene	1	View
2	UNC5B	HPV	Suppressor gene	1	View
3	UNC5A	HPV	Suppressor gene	1	View
4	SMYD4	HPV	Suppressor gene	1	View
5	TRIT1	HPV	Suppressor gene	1	View
6	XRCC5	HPV	Suppressor gene	1	View
7	SYNPO2	HPV	Suppressor gene	3	View
8	WWOX	HPV	Suppressor gene	5	View
9	SOD2	HPV	Suppressor gene	1	View
10	UFL1	HPV	Suppressor gene	1	View
11	THBS1	HPV	Suppressor gene	1	View
12	SMCHD1	HPV	Suppressor gene	1	View
13	WDR11	HPV	Suppressor gene	1	View
14	SMARCC1	HPV	Suppressor gene	1	View
15	TGFBR3	HPV	Suppressor gene	1	View
16	STARD13	HPV	Suppressor gene	2	View
17	TGFBI	HPV	Suppressor gene	1	View
18	UBE4B	HPV	Suppressor gene	1	View
19	SMARCA4	HPV	Suppressor gene	1	View
20	SMARCA2	HPV	Suppressor gene	1	View
21	SMAD2	HPV	Suppressor gene	1	View
22	WNT7A	HPV	Suppressor gene	1	View
23	TFAP2A	HPV	Suppressor gene	1	View
24	STK11	HPV	Suppressor gene	1	View
25	ZBTB18	HPV	Suppressor gene	1	View
26	VIL1	HPV	Suppressor gene	1	View
27	ZBTB7C	HPV	Suppressor gene	7	View
28	SLIT2	HPV	Suppressor gene	3	View
29	TET2	HPV	Suppressor gene	1	View
30	WIF1	HPV	Suppressor gene	1	View
31	TES	HPV	Suppressor gene	1	View
32	TRIM24	HPV	Suppressor gene	1	View
33	TANK	HPV	Suppressor gene	2	View
34	ZFHX3	HPV	Suppressor gene	1	View
35	TWIST2	HPV	Suppressor gene	2	View
36	TSLP	HPV	Suppressor gene	1	View
37	TCF4	HPV	Suppressor gene	2	View
38	TUSC7	HPV	Suppressor gene	2	View
39	TP53BP2	HPV	Suppressor gene	1	View
40	TCF7L2	HPV	Suppressor gene	2	View
41	TP53	HPV	Suppressor gene	4	View
42	ZNF292	HPV	Suppressor gene	1	View
43	PRDM5	HPV	Suppressor gene	3	View
44	SASH1	HPV	Suppressor gene	2	View
45	RB1CC1	HPV	Suppressor gene	2	View
46	RASSF2	HPV	Suppressor gene	2	View
47	RBBP7	HPV	Suppressor gene	1	View
48	MME	HPV	Suppressor gene	2	View
49	RBBP8	HPV	Suppressor gene	2	View
50	RARB	HPV	Suppressor gene	1	View
51	RBL1	HPV	Suppressor gene	1	View
52	MAPK10	HPV	Suppressor gene	3	View
53	RBM4	HPV	Suppressor gene	1	View
54	RBM6	HPV	Suppressor gene	1	View
55	RBMS3	HPV	Suppressor gene	2	View
56	RBMX	HPV	Suppressor gene	1	View
57	MT1DP	HPV	Suppressor gene	1	View
58	MTAP	HPV	Suppressor gene	2	View
59	RECK	HPV	Suppressor gene	1	View
60	PTPRT	HPV	Suppressor gene	4	View
61	MTUS1	HPV	Suppressor gene	1	View
62	PTPRK	HPV	Suppressor gene	3	View
63	PTPRJ	HPV	Suppressor gene	1	View
64	PTPRD	HPV	Suppressor gene	4	View
65	PTPRC	HPV	Suppressor gene	2	View
66	MAP2K4	HPV	Suppressor gene	2	View
67	PTPN13	HPV	Suppressor gene	2	View
68	MYBBP1A	HPV	Suppressor gene	1	View
69	PTPN12	HPV	Suppressor gene	1	View
70	S100A2	HPV	Suppressor gene	1	View
71	RNF111	HPV	Suppressor gene	1	View
72	MIR187	HPV	Suppressor gene	1	View
73	SCUBE2	HPV	Suppressor gene	1	View
74	MYO18B	HPV	Suppressor gene	2	View
75	PTGDR	HPV	Suppressor gene	1	View
76	PTEN	HPV	Suppressor gene	1	View
77	NBN	HPV	Suppressor gene	1	View
78	PRR5	HPV	Suppressor gene	1	View
79	RNF180	HPV	Suppressor gene	3	View
80	NDN	HPV	Suppressor gene	1	View
81	SDHB	HPV	Suppressor gene	1	View
82	PROX1	HPV	Suppressor gene	1	View
83	PRKN	HPV	Suppressor gene	1	View
84	NEDD4L	HPV	Suppressor gene	1	View
85	MIR148A	HPV	Suppressor gene	1	View
86	RUNX2	HPV	Suppressor gene	2	View
87	PRICKLE1	HPV	Suppressor gene	1	View
88	NF1	HPV	Suppressor gene	1	View
89	MIR147A	HPV	Suppressor gene	2	View
90	NFATC2	HPV	Suppressor gene	2	View
91	MAD1L1	HPV	Suppressor gene	1	View
92	MIR138-1	HPV	Suppressor gene	1	View
93	PRDM2	HPV	Suppressor gene	1	View
94	PRDM1	HPV	Suppressor gene	1	View
95	NFKB1	HPV	Suppressor gene	1	View
96	ONECUT1	HPV	Suppressor gene	1	View
97	LRIG1	HPV	Suppressor gene	1	View
98	PCDH8	HPV	Suppressor gene	1	View
99	LRIG3	HPV	Suppressor gene	1	View
100	PCDH9	HPV	Suppressor gene	2	View


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