HTLV1 VIS-Cistrome Factor Overlap in each human chromosome

This page provides a heatmap of three VIS-Factors overlap counts by chromosome to help users have a better understanding of the distribution of VIS-Factors overlap in the human genome.

HTLV1 Overall Heatmap

CA: chromatin accessibility TFBS: transcription factor binding site HM: histone modification

Browse data distribution by Chromosome or Factor

*Please select the Chromosome or Factor you are interested in, the page will be automatically redirected.

Chromosome:

Cistrome Factor:

VIS locations with VIS-cistrome overlap information and VIS details for each chromosome

Show VIS with one point

Rank of Overlapped Records (S)	DVID	Location	HM (S)	TFBS (S)	CA (S)	Sum (S)	HM (B)	TFBS (B)	CA (B)	Sum (B)	Case/Length	Detail
1	6400005	52033578, 52033653	4486	1929	1073	7488	4522	2460	1276	8258	Case 2 \| 75	View
2	6100077	244863692, 244864138	2753	478	261	3492	3251	717	348	4316	Case 2 \| 446	View
3	6100069	66332505, 66332691	1168	443	269	1880	1225	444	273	1942	Case 2 \| 186	View
4	6100062	629670, 630597	93	128	761	982	2350	7942	2090	12382	Case 2 \| 927	View
5	6100064	632334, 634896	161	148	118	427	3940	9486	2116	15542	Case 2 \| 2562	View
6	6400283	7341672, 7341748	102	90	208	400	107	92	231	430	Case 2 \| 76	View
7	6400014	172955776, 172955846	58	69	109	236	66	69	109	244	Case 2 \| 70	View
8	6400021	236465556, 236465632	220	6	6	232	245	12	9	266	Case 2 \| 76	View
9	6100002	633575, 634889	16	27	177	220	3854	9474	2113	15441	Case 2 \| 1314	View
10	6400296	109267009, 109267085	16	66	109	191	26	85	166	277	Case 2 \| 76	View
11	6400011	121743483, 121743557	120	55	7	182	120	56	7	183	Case 2 \| 74	View
12	6400302	156165786, 156165861	166	4		170	212	4		216	Case 2 \| 75	View
13	6400290	94847890, 94847966	19	37	96	152	22	37	96	155	Case 2 \| 76	View
14	6100075	150575072, 150575614	92	8		100	154	12	3	169	Case 2 \| 542	View
15	6400308	235759595, 235759671	37	22	25	84	37	22	25	84	Case 2 \| 76	View
16	6100076	241115099, 241115419	29	12	38	79	35	13	39	87	Case 2 \| 320	View
17	6100063	631081, 632028	12	20	39	71	184	534	221	939	Case 2 \| 947	View
18	6100001	631078, 631980	12	20	38	70	181	529	199	909	Case 2 \| 902	View
19	6100003	90400503, 90401054	19	22	24	65	34	42	26	102	Case 2 \| 551	View
20	6400016	209556643, 209556719	34	19	8	61	34	21	8	63	Case 2 \| 76	View
21	6400298	111290948, 111291024	10	31	16	57	11	31	16	58	Case 2 \| 76	View
22	6400012	156048630, 156048705	53	2		55	54	12		66	Case 2 \| 75	View
23	6400001	15910653, 15910729	30	1		31	30	1		31	Case 2 \| 76	View
24	6400015	178255910, 178255965		25		25		25		25	Case 2 \| 55	View
25	6100065	31263365, 31263818	25			25	78	84	9	171	Case 2 \| 453	View
26	6100068	66325715, 66325930	4	2	15	21	8	5	16	29	Case 2 \| 215	View
27	6400288	51078074, 51078119	18	3		21	25	5		30	Case 2 \| 45	View
28	6100071	66355525, 66355794	20		1	21	31	1	2	34	Case 2 \| 269	View
29	6400293	103075183, 103075259	12	1	8	21	14	1	12	27	Case 2 \| 76	View
30	6100073	66363181, 66363525	19			19	68	13	1	82	Case 2 \| 344	View
31	6400292	98063899, 98063974	18	1		19	18	2		20	Case 2 \| 75	View
32	6400019	221909206, 221909282	12		6	18	12		7	19	Case 2 \| 76	View
33	6100004	90419998, 90420065	10	2	6	18	15	6	18	39	Case 2 \| 67	View
34	6400020	225996891, 225996967	16	1		17	17	1		18	Case 2 \| 76	View
35	6400304	194719085, 194719158	8	4		12	8	4		12	Case 2 \| 73	View
36	6400013	161848535, 161848599	7	4	1	12	14	15	2	31	Case 2 \| 64	View
37	6400009	106238722, 106238798	6	5		11	6	11		17	Case 2 \| 76	View
38	6400306	205614230, 205614306	4	3	3	10	4	3	3	10	Case 2 \| 76	View
39	6400307	215609556, 215609632	10			10	10			10	Case 2 \| 76	View
40	6400284	8338598, 8338636	9	1		10	9	2		11	Case 2 \| 38	View
41	6400297	111010813, 111010882	6	4		10	6	4		10	Case 2 \| 69	View
42	6100005	208635434, 208636214	10			10	59	23	3	85	Case 2 \| 780	View
43	6100072	66361613, 66361769	9			9	12			12	Case 2 \| 156	View
44	6400291	96219318, 96219394	3	4	2	9	4	4	2	10	Case 2 \| 76	View
45	6400299	114701878, 114701954	8	1		9	9	1		10	Case 2 \| 76	View
46	6400305	202778869, 202778945	7	2		9	7	2		9	Case 2 \| 76	View
47	6100074	91387230, 91387560	6	2		8	415	13	33	461	Case 2 \| 330	View
48	6400303	165049390, 165049466	7			7	7			7	Case 2 \| 76	View
49	6400004	36663133, 36663209	1	5		6	1	5		6	Case 2 \| 76	View
50	6400285	21923051, 21923127	2		4	6	2		4	6	Case 2 \| 76	View
51	6100066	66318859, 66319325		5		5	2	17		19	Case 2 \| 466	View
52	6400289	60518408, 60518484	2	3		5	2	3	1	6	Case 2 \| 76	View
53	6400287	46214787, 46214863	3	1		4	4	1		5	Case 2 \| 76	View
54	6400008	101925040, 101925116	1	1	1	3	1	1	1	3	Case 2 \| 76	View
55	6400300	117229271, 117229345		3		3		3		3	Case 2 \| 74	View
56	6400018	220148754, 220148829		3		3		4		4	Case 2 \| 75	View
57	6400003	34130928, 34131003	1		1	2	1		1	2	Case 2 \| 75	View
58	6400007	72288333, 72288409		2		2		3		3	Case 2 \| 76	View
59	6400023	244605655, 244605696	1	1		2	1	2		3	Case 2 \| 41	View
60	6100070	66340728, 66341967	2			2	16	17	46	79	Case 2 \| 1239	View
61	6400017	215832802, 215832878	2			2	2	1		3	Case 2 \| 76	View
62	6400002	26868538, 26868614	2			2	2			2	Case 2 \| 76	View
63	6400006	55973784, 55973860	1	1		2	1	1		2	Case 2 \| 76	View
64	6400010	107171071, 107171147		2		2	1	2		3	Case 2 \| 76	View
65	6400286	38749033, 38749109		1		1		1		1	Case 2 \| 76	View
66	6400295	105991657, 105991733	1			1	1			1	Case 2 \| 76	View
67	6100067	66320007, 66320463		1		1	2	10	3	15	Case 2 \| 456	View
68	6400309	242151803, 242151878				0				0	Case 2 \| 75	View
69	6400294	103763116, 103763176				0				0	Case 2 \| 60	View
70	6100006	208638529, 208639102				0	6	5		11	Case 2 \| 573	View
71	6100007	246764252, 246764362				0				0	Case 2 \| 110	View
72	6400301	152589964, 152590027				0				0	Case 2 \| 63	View
73	6400022	237898619, 237898695				0		1		1	Case 2 \| 76	View

Contents
Description

VIS-Cistrome factor overlapping Description

The overlaps between integration site and cistrome are retrieved by genome search engine GIGGLE (Ryan M Layer et al. 2018). We built three indexs including histone modification, transcription factor binding site and chromatin accessibility, then we searched the significance of shared genomic loci (overlaps) between query VIS and Cistrome (Rongbin Zheng et al. 2019) genome interval files. So one VIS may have several overlaps with multiple Cistrome factor-related samples, the associated factor and overlap amount could indicate that the virus integration site is a potentially functional DNA element.

HTLV1 Overall Heatmap

This heatmap is an overall statistics for HTLV1 VIS-Cistrome factor overlapped records by chromosome. The darker the red, the greater the overlapped records number. The user can view specific number by moving mouse pointer.

Browse data by Chromosome or Factor

The user can browse HTLV1 VIS-Cistrome factor overlapped records data by specific chromosome or statistics histogram for specific Cistrome factor when users click the chromosome or Cistrome factor the user are interested in.

VIS locations with VIS-cistrome overlap information and VIS details for each chromosome

This table showed the VIS locations with VIS-cistrome overlap information and VIS details for each chromosome, you can click green button with number which indicates the overlapped records of this VIS and 3 cistrome factor (histone modification, transcription factor binding site and chromatin accessibility) to inspect details of cistrome sample and factor information, you can click "Detail" button to inspect other information of this VIS.

Case 1
： The deletion of human fragments during the integration event.

Case 2
： Due to the experimental method/design, two viral insertion positions were provided in the literature.
Length:
~40 bp

41 bp~1000 bp

1001 bp~


Home	Virus	Gene	Disease	Dataset	Download	Help