Home
Virus
Gene
Disease
Dataset
Download
Help
 
EBV VIS-Cistrome Factor Overlap in each human chromosome

This page provides a heatmap of three VIS-Factors overlap counts by chromosome to help users have a better understanding of the distribution of VIS-Factors overlap in the human genome.


EBV Overall Heatmap
CA: chromatin accessibility TFBS: transcription factor binding site HM: histone modification
Browse data distribution by Chromosome or Factor
*Please select the Chromosome or Factor you are interested in, the page will be automatically redirected.
 
 
VIS locations with VIS-cistrome overlap information and VIS details for each chromosome

Rank of Overlapped Records DVID Location HM TFBS CA Sum of Overlapped Records Detail
1 3000005 27322188 917 3650 1937 6504 View
2 3000028 63592996 1244 90 51 1385 View
3 3300196 175142171 529 203 152 884 View
4 3000059 204195378 159 236 1 396 View
5 3000064 204195509 125 206 2 333 View
6 3000083 121743427 158 54 7 219 View
7 3000101 31573877 14 98 64 176 View
8 3000106 38731166 9 81 79 169 View
9 3300098 6149824 107 42 149 View
10 3000118 87346616 26 47 69 142 View
11 3000133 173459918 85 31 8 124 View
12 3000135 632885 24 29 67 120 View
13 3000138 6862426 117 117 View
14 3000152 17044460 105 105 View
15 3300093 46345149 91 91 View
16 3000178 25103641 35 38 12 85 View
17 3000187 78411844 42 38 80 View
18 3000196 60234999 17 8 51 76 View
19 3000199 154237773 22 51 2 75 View
20 3000204 23729437 64 9 73 View
21 3000214 2859563 45 19 1 65 View
22 3300032 68102203 30 11 17 58 View
23 3000228 160934670 56 1 57 View
24 3000232 78464632 11 8 37 56 View
25 3000247 212357720 40 11 1 52 View
26 3300212 180083412 18 6 26 50 View
27 3300245 164465955 10 29 5 44 View
28 3000276 4520720 20 23 43 View
29 3000278 20557426 42 1 43 View
30 3300117 6971930 27 12 4 43 View
31 3000280 182835936 30 12 42 View
32 3000282 19934600 27 5 9 41 View
33 3000300 158099013 2 35 37 View
34 3300176 33134823 22 4 11 37 View
35 3300129 103372043 32 2 2 36 View
36 3000308 40929821 28 7 35 View
37 3000330 35385916 23 8 31 View
38 3000331 112219531 15 2 14 31 View
39 3000352 167850204 23 6 29 View
40 3000368 22931745 10 17 27 View
41 3000380 20557404 24 2 26 View
42 3000396 32791346 22 1 23 View
43 3000405 173740962 19 3 22 View
44 3300054 55989955 2 5 14 21 View
45 3000440 5487593 14 4 18 View
46 3000457 244629359 7 4 6 17 View
47 3000478 212774109 15 1 16 View
48 3000487 232083814 14 2 16 View
49 3300170 168198836 10 5 15 View
50 3000510 160198023 7 7 14 View
51 3000527 84650135 13 13 View
52 3300034 11434291 11 2 13 View
53 3300213 243322691 2 9 2 13 View
54 3000555 193043146 2 7 2 11 View
55 3000561 107248985 7 3 1 11 View
56 3000562 111752438 11 11 View
57 3000563 228805886 4 7 11 View
58 3000600 91519596 1 2 6 9 View
59 3000628 40081100 7 1 8 View
60 3000629 55870739 5 3 8 View
61 3000630 56658600 8 8 View
62 3000631 237804783 5 3 8 View
63 3000637 11040902 7 1 8 View
64 3000642 31867518 5 2 7 View
65 3000643 218965154 5 2 7 View
66 3100004 64179284 6 1 7 View
67 3000695 22687828 2 4 6 View
68 3300008 35347514 1 5 6 View
69 3000710 49520511 4 1 5 View
70 3300171 243436968 3 2 5 View
71 3300248 221980516 1 4 5 View
72 3000756 248706898 4 4 View
73 3000765 178384474 1 3 4 View
74 3000766 215303216 4 4 View
75 3300275 160059889 2 2 4 View
76 3000792 143740453 3 3 View
77 3000803 187818572 3 3 View
78 3000804 248266225 2 1 3 View
79 3300246 181449599 3 3 View
80 3000853 60057255 1 1 2 View
81 3000854 165623954 2 2 View
82 3300164 235604115 2 2 View
83 3300239 104533867 2 2 View
84 3000918 110664109 1 1 View
85 3000919 223180211 1 1 View
86 3000948 92416786 1 1 View
87 3000949 116979538 1 1 View
88 3300017 72772046 1 1 View
89 3300154 71405335 1 1 View
90 3300237 87914960 1 1 View
91 3000994 198402633 0 View
92 3000995 219007034 0 View
93 3001031 12922677 0 View
94 3001032 34491903 0 View
95 3001033 98811042 0 View
96 3001034 117745480 0 View
97 3001109 142314854 0 View
98 3001111 140119308 0 View
99 3300013 142655023 0 View
100 3300104 96680222 0 View
101 3300218 7564102 0 View
102 3300247 188198733 0 View
Contents
Description
VIS-Cistrome factor overlapping Description

The overlaps between integration site and cistrome are retrieved by genome search engine GIGGLE (Ryan M Layer et al. 2018). We built three indexs including histone modification, transcription factor binding site and chromatin accessibility, then we searched the significance of shared genomic loci (overlaps) between query VIS and Cistrome (Rongbin Zheng et al. 2019) genome interval files. So one VIS may have several overlaps with multiple Cistrome factor-related samples, the associated factor and overlap amount could indicate that the virus integration site is a potentially functional DNA element.

  • EBV Overall Heatmap

This heatmap is an overall statistics for EBV VIS-Cistrome factor overlapped records by chromosome. The darker the red, the greater the overlapped records number. The user can view specific number by moving mouse pointer.

  • Browse data by Chromosome or Factor

The user can browse EBV VIS-Cistrome factor overlapped records data by specific chromosome or statistics histogram for specific Cistrome factor when users click the chromosome or Cistrome factor the user are interested in.

  • VIS locations with VIS-cistrome overlap information and VIS details for each chromosome

This table showed the VIS locations with VIS-cistrome overlap information and VIS details for each chromosome, you can click green button with number which indicates the overlapped records of this VIS and 3 cistrome factor (histone modification, transcription factor binding site and chromatin accessibility) to inspect details of cistrome sample and factor information, you can click "Detail" button to inspect other information of this VIS.