HIV VIS-Cistrome Factor Overlap in each human chromosome

This page provides a heatmap of three VIS-Factors overlap counts by chromosome to help users have a better understanding of the distribution of VIS-Factors overlap in the human genome.

HIV Overall Heatmap

CA: chromatin accessibility TFBS: transcription factor binding site HM: histone modification

Browse data distribution by Chromosome or Factor

*Please select the Chromosome or Factor you are interested in, the page will be automatically redirected.

Chromosome:

Cistrome Factor:

VIS locations with VIS-cistrome overlap information and VIS details for each chromosome

Show VIS with one point

Rank of Overlapped Records (S)	DVID	Location	HM (S)	TFBS (S)	CA (S)	Sum (S)	HM (B)	TFBS (B)	CA (B)	Sum (B)	Case/Length	Detail
1	4000003	170074849, 170074941	1280	2377	1987	5644	1945	2399	1988	6332	Case 2 \| 92	View
2	4000291	37497945, 37498309	136	212	36	384	170	322	89	581	Case 2 \| 364	View
3	4000461	13712929, 13713082	273	27	7	307	409	31	7	447	Case 2 \| 153	View
4	4000709	1859831, 1859866	288	16	2	306	291	16	2	309	Case 2 \| 35	View
5	4000722	234393510, 234393553	142	147	13	302	142	148	13	303	Case 2 \| 43	View
6	4000901	167676973, 167677130	167	64	7	238	168	73	12	253	Case 2 \| 157	View
7	4000913	32949568, 32949616	163	32	14	209	192	40	19	251	Case 2 \| 48	View
8	4000688	224287680, 224287804	143	5	31	179	191	47	79	317	Case 2 \| 124	View
9	4001183	121743000, 121743142	163	4		167	192	7		199	Case 2 \| 142	View
10	4001238	66938915, 66939052	1	52	112	165	2	75	113	190	Case 2 \| 137	View
11	4000824	25629777, 25629928	136	25	2	163	143	93	36	272	Case 2 \| 151	View
12	4001395	20870111, 20870311	6	145	11	162	12	145	13	170	Case 2 \| 200	View
13	4001438	2454306, 2454453	5	154	1	160	5	159	1	165	Case 2 \| 147	View
14	4001571	26729798, 26729859	85	52	9	146	85	52	12	149	Case 2 \| 61	View
15	4000938	92973559, 92973885	54	40	49	143	67	82	96	245	Case 2 \| 326	View
16	4001703	25448042, 25448068	125	13	1	139	125	13	1	139	Case 2 \| 26	View
17	4001540	1877919, 1878031	123	6	7	136	123	13	17	153	Case 2 \| 112	View
18	4001905	51864206, 51864267	123	1		124	123	1		124	Case 2 \| 61	View
19	4001647	100979894, 100980024	7	36	78	121	7	60	78	145	Case 2 \| 130	View
20	4002011	8478790, 8478862	46	65	7	118	46	65	7	118	Case 2 \| 72	View
21	4000549	23756637, 23756914	93	7	15	115	121	74	192	387	Case 2 \| 277	View
22	4001368	52766379, 52766666	57	47	4	108	72	90	23	185	Case 2 \| 287	View
23	4002121	160808256, 160808494	90	15	1	106	93	18	1	112	Case 2 \| 238	View
24	4000900	1613802, 1613952	82	16		98	231	21	1	253	Case 2 \| 150	View
25	4001939	24916066, 24916124	17	67	13	97	20	82	20	122	Case 2 \| 58	View
26	4002430	52490848, 52491037	65	27		92	68	27		95	Case 2 \| 189	View
27	4002405	154213030, 154213079	88	2		90	93	2	1	96	Case 2 \| 49	View
28	4001926	25560146, 25560271	4	36	48	88	24	43	56	123	Case 2 \| 125	View
29	4000693	39282613, 39282716	37	23	28	88	108	80	127	315	Case 2 \| 103	View
30	4002546	100979979, 100980024	7	30	46	83	7	37	46	90	Case 2 \| 45	View
31	4002688	22058168, 22058199	72	8	1	81	72	11	1	84	Case 2 \| 31	View
32	4002337	229133286, 229133480	47	27	5	79	58	30	11	99	Case 2 \| 194	View
33	4002815	148955262, 148955660	79			79	81	3		84	Case 2 \| 398	View
34	4002667	193634951, 193634985	62	3	14	79	62	3	20	85	Case 2 \| 34	View
35	4002506	26701446, 26701790	31	6	40	77	35	12	44	91	Case 2 \| 344	View
36	4001679	21058491, 21058710	39	32	4	75	80	55	6	141	Case 2 \| 219	View
37	4002933	1803604, 1803681	72	2		74	73	2		75	Case 2 \| 77	View
38	4003033	100904851, 100904963	58	2	9	69	61	2	9	72	Case 2 \| 112	View
39	4002180	9559468, 9559557	38	22	6	66	59	29	19	107	Case 2 \| 89	View
40	4003329	211664890, 211665029	57	7		64	57	7		64	Case 2 \| 139	View
41	4000788	151670049, 151670839	61	2		63	123	146	15	284	Case 2 \| 790	View
42	4003615	197595712, 197595825	35	15	8	58	35	15	8	58	Case 2 \| 113	View
43	4001866	42258842, 42259066	27	27	4	58	86	32	8	126	Case 2 \| 224	View
44	4003768	218303177, 218303216	52	3		55	52	3		55	Case 2 \| 39	View
45	4003328	52406283, 52406440	52	1		53	63	1		64	Case 2 \| 157	View
46	4002336	202765721, 202765984	15	6	31	52	21	14	65	100	Case 2 \| 263	View
47	4004125	117932940, 117932976	30	17	2	49	30	17	2	49	Case 2 \| 36	View
48	4003721	108900349, 108900502	33	16		49	38	17	1	56	Case 2 \| 153	View
49	4004190	111171942, 111172126	42	6		48	42	6		48	Case 2 \| 184	View
50	4004261	100398295, 100398412	27	12	6	45	27	14	6	47	Case 2 \| 117	View
51	4004396	212755053, 212755139	24	10	10	44	25	10	10	45	Case 2 \| 86	View
52	4003783	70320776, 70320808	43			43	54			54	Case 2 \| 32	View
53	4004336	184960990, 184961033	29	11	2	42	31	13	2	46	Case 2 \| 43	View
54	4003827	151002202, 151002369	15	14	12	41	27	15	12	54	Case 2 \| 167	View
55	4004669	150145079, 150145132	30	11		41	30	11		41	Case 2 \| 53	View
56	4003576	154176747, 154176997	17	1	22	40	23	13	22	58	Case 2 \| 250	View
57	4004124	50972627, 50972777	33	7		40	41	8		49	Case 2 \| 150	View
58	4004834	150145085, 150145132	28	11		39	28	11		39	Case 2 \| 47	View
59	4000595	10280459, 10281096	37	2		39	144	39	176	359	Case 2 \| 637	View
60	4003468	19746300, 19746452	35	2		37	50	9	2	61	Case 2 \| 152	View
61	4003532	240194539, 240195410	18	6	13	37	24	15	21	60	Case 2 \| 871	View
62	4002987	161183860, 161183964	35	1		36	72	1		73	Case 2 \| 104	View
63	4004070	93350177, 93350280	29	7		36	37	13		50	Case 2 \| 103	View
64	4004623	172207449, 172208038	33	2		35	33	6	2	41	Case 2 \| 589	View
65	4004928	93350159, 93350182	30	5		35	30	8		38	Case 2 \| 23	View
66	4001069	89168999, 89169260	32	3		35	38	163	20	221	Case 2 \| 261	View
67	4004068	10080429, 10080624	33			33	47	3		50	Case 2 \| 195	View
68	4004927	93350136, 93350182	29	3		32	30	8		38	Case 2 \| 46	View
69	4003164	41895542, 41895621	3	25	3	31	5	56	7	68	Case 2 \| 79	View
70	4004666	25786231, 25786503	3	21	6	30	10	23	8	41	Case 2 \| 272	View
71	4004668	93350002, 93350182	25	5		30	30	11		41	Case 2 \| 180	View
72	4001750	229340167, 229341031	30			30	87	37	10	134	Case 2 \| 864	View
73	4001927	150092139, 150092385	24	5		29	91	14	19	124	Case 2 \| 246	View
74	4002452	39282517, 39282616	24	1	3	28	40	24	30	94	Case 2 \| 99	View
75	4005216	8720368, 8720470	25	3		28	29	6		35	Case 2 \| 102	View
76	4005217	229305465, 229305500	11	6	11	28	11	7	17	35	Case 2 \| 35	View
77	4003887	112583399, 112583483	6	7	12	25	14	18	21	53	Case 2 \| 84	View
78	4004069	28744645, 28744767	21	4		25	43	7		50	Case 2 \| 122	View
79	4006140	27446256, 27446290	19	6		25	20	6	1	27	Case 2 \| 34	View
80	4004833	1222218, 1222479	15	7	1	23	25	9	6	40	Case 2 \| 261	View
81	4006775	155336295, 155336454	1	21	1	23	1	21	1	23	Case 2 \| 159	View
82	4002940	235664498, 235664852	19	2	1	22	50	19	5	74	Case 2 \| 354	View
83	4006293	43568914, 43569058	17	4		21	21	5		26	Case 2 \| 144	View
84	4005624	200233151, 200233216	20	1		21	30	1		31	Case 2 \| 65	View
85	4006436	100370110, 100370257	18	3		21	19	6		25	Case 2 \| 147	View
86	4006292	13757351, 13757384	7	6	7	20	7	8	11	26	Case 2 \| 33	View
87	4006774	116751014, 116751080	18	2		20	19	4		23	Case 2 \| 66	View
88	4004667	40697133, 40697272	17	2	1	20	18	21	2	41	Case 2 \| 139	View
89	4002120	150422749, 150422940	7	13		20	8	92	11	111	Case 2 \| 191	View
90	4007137	116786752, 116786885	19	1		20	20	1		21	Case 2 \| 133	View
91	4006943	37488077, 37488103	14	5		19	16	6		22	Case 2 \| 26	View
92	4006002	12609241, 12609322	16	3		19	22	6		28	Case 2 \| 81	View
93	4007538	35522013, 35522040	17	2		19	17	2		19	Case 2 \| 27	View
94	4007541	230196104, 230196178	18			18	18	1		19	Case 2 \| 74	View
95	4007343	77965583, 77965642	8	7	3	18	10	7	3	20	Case 2 \| 59	View
96	4007540	100937105, 100937172	10	8		18	11	8		19	Case 2 \| 67	View
97	4005623	193029132, 193029252	15	2		17	17	14		31	Case 2 \| 120	View
98	4006942	30983981, 30984045	2	6	9	17	6	6	10	22	Case 2 \| 64	View
99	4006291	13757290, 13757384	6	3	7	16	7	8	11	26	Case 2 \| 94	View
100	4005873	13757208, 13757384	5	4	7	16	8	10	11	29	Case 2 \| 176	View
101	4005877	26482439, 26482507	5	8	3	16	16	8	5	29	Case 2 \| 68	View
102	4005874	13757215, 13757384	5	4	7	16	8	10	11	29	Case 2 \| 169	View
103	4007342	67322188, 67322303	16			16	20			20	Case 2 \| 115	View
104	4005876	26482435, 26482507	5	7	3	15	16	8	5	29	Case 2 \| 72	View
105	4006944	224426789, 224426869	12	3		15	18	4		22	Case 2 \| 80	View
106	4007993	40230534, 40230664	12	3		15	13	3	1	17	Case 2 \| 130	View
107	4007174	55121435, 55122229	6	7	2	15	10	8	2	20	Case 2 \| 794	View
108	4008055	161818100, 161818331	9	5		14	9	7		16	Case 2 \| 231	View
109	4005775	23570199, 23570789	8	5		13	9	19	1	29	Case 2 \| 590	View
110	4008800	111465943, 111466184	1	12		13	1	13		14	Case 2 \| 241	View
111	4007994	91825850, 91826121	12	1		13	15	1	1	17	Case 2 \| 271	View
112	4009062	18494837, 18495156	12			12	13			13	Case 2 \| 319	View
113	4008271	110878433, 110878685	12			12	13	3		16	Case 2 \| 252	View
114	4009361	153644611, 153644783	12			12	12			12	Case 2 \| 172	View
115	4009724	167272282, 167272345	10	1		11	10	1		11	Case 2 \| 63	View
116	4009362	211808327, 211808393	10	1		11	10	2		12	Case 2 \| 66	View
117	4009722	151414951, 151414997	10	1		11	10	1		11	Case 2 \| 46	View
118	4009723	151414971, 151414997	10	1		11	10	1		11	Case 2 \| 26	View
119	4010102	184069191, 184069307	3	7		10	3	7		10	Case 2 \| 116	View
120	4007340	21020098, 21020172	5	5		10	9	9	2	20	Case 2 \| 74	View
121	4009721	151414947, 151414997	9	1		10	10	1		11	Case 2 \| 50	View
122	4010103	235740189, 235740232	10			10	10			10	Case 2 \| 43	View
123	4008801	203802568, 203802754	8	1	1	10	12	1	1	14	Case 2 \| 186	View
124	4010100	23311365, 23311417	10			10	10			10	Case 2 \| 52	View
125	4008802	224124784, 224125018	8	2		10	10	3	1	14	Case 2 \| 234	View
126	4009720	151414859, 151414997	9			9	10	1		11	Case 2 \| 138	View
127	4009363	223838858, 223838918		9		9		12		12	Case 2 \| 60	View
128	4010479	212871023, 212871128	5	4		9	5	4		9	Case 2 \| 105	View
129	4008318	20876496, 20876921	4	5		9	8	5	2	15	Case 2 \| 425	View
130	4009719	151414847, 151414997	9			9	10	1		11	Case 2 \| 150	View
131	4005875	26482342, 26482507	3	5	1	9	16	8	5	29	Case 2 \| 165	View
132	4005528	160581586, 160581849	5		3	8	14	1	17	32	Case 2 \| 263	View
133	4009788	84147059, 84147322	1	7		8	3	7		10	Case 2 \| 263	View
134	4007385	64945656, 64945746	6	2		8	13	5	1	19	Case 2 \| 90	View
135	4003614	66346019, 66346487	3	5		8	7	38	13	58	Case 2 \| 468	View
136	4010934	150086305, 150086342	8			8	8			8	Case 2 \| 37	View
137	4010936	167245034, 167245140	6	1		7	7	1		8	Case 2 \| 106	View
138	4005029	224397339, 224398319	6	1		7	13	23		36	Case 2 \| 980	View
139	4010937	198766445, 198766557		7		7		8		8	Case 2 \| 112	View
140	4009116	98867557, 98868391	5	2		7	5	7		12	Case 2 \| 834	View
141	4010101	116395429, 116395544	7			7	7	3		10	Case 2 \| 115	View
142	4010480	235178569, 235178721		7		7		8	1	9	Case 2 \| 152	View
143	4010935	161205277, 161205399	5	2		7	6	2		8	Case 2 \| 122	View
144	4008513	16437091, 16437469	6	1		7	9	5	1	15	Case 2 \| 378	View
145	4008803	241633862, 241633940	2	4	1	7	9	4	1	14	Case 2 \| 78	View
146	4003886	66346185, 66346487	3	3	1	7	5	35	13	53	Case 2 \| 302	View
147	4011967	8587539, 8587574	5	1		6	5	1		6	Case 2 \| 35	View
148	4011971	225902919, 225902979	2	2	2	6	2	2	2	6	Case 2 \| 60	View
149	4011432	229755014, 229755105	4	2		6	5	2		7	Case 2 \| 91	View
150	4011968	39401739, 39401845	4	2		6	4	2		6	Case 2 \| 106	View
151	4007341	28468744, 28469035	5	1		6	10	10		20	Case 2 \| 291	View
152	4011429	111466514, 111466795	1	5		6	2	5		7	Case 2 \| 281	View
153	4010939	204794357, 204794603	6			6	8			8	Case 2 \| 246	View
154	4005346	178898108, 178898959	2	4		6	5	23	7	35	Case 2 \| 851	View
155	4011427	51241615, 51241700	4	1		5	4	3		7	Case 2 \| 85	View
156	4008856	145203542, 145203881	4	1		5	10	3		13	Case 2 \| 339	View
157	4000618	246774655, 246775525	5			5	44	277	20	341	Case 2 \| 870	View
158	4012554	9695199, 9695291	5			5	5			5	Case 2 \| 92	View
159	4010933	116314401, 116314446	1	4		5	2	6		8	Case 2 \| 45	View
160	4011428	52241965, 52241992	3	2		5	5	2		7	Case 2 \| 27	View
161	4011969	111574778, 111574843		3	2	5	1	3	2	6	Case 2 \| 65	View
162	4012555	20809201, 20809231	2	3		5	2	3		5	Case 2 \| 30	View
163	4012559	173948465, 173948498	4	1		5	4	1		5	Case 2 \| 33	View
164	4010938	204794598, 204794764	5			5	5	2	1	8	Case 2 \| 166	View
165	4003056	155842837, 155842975	3	2		5	10	59	2	71	Case 2 \| 138	View
166	4011430	150943713, 150943849	5			5	7			7	Case 2 \| 136	View
167	4012556	32058271, 32058361	5			5	5			5	Case 2 \| 90	View
168	4010532	154920684, 154921426	4			4	7	1		8	Case 2 \| 742	View
169	4013275	229755100, 229755234	3	1		4	3	1		4	Case 2 \| 134	View
170	4007383	47281229, 47282067	4			4	8	12	1	21	Case 2 \| 838	View
171	4012558	151675428, 151675518	3	1		4	4	1		5	Case 2 \| 90	View
172	4013272	150218324, 150218408	1	3		4	1	3		4	Case 2 \| 84	View
173	4013273	155444960, 155444982	4			4	4			4	Case 2 \| 22	View
174	4013267	10355362, 10355658	3			3	3	1		4	Case 2 \| 296	View
175	4013271	70230406, 70230603	2	1		3	3	1		4	Case 2 \| 197	View
176	4013268	15936759, 15936810	3			3	4			4	Case 2 \| 51	View
177	4013965	229490295, 229490401	1	2		3	1	2		3	Case 2 \| 106	View
178	4011534	70348186, 70348283	2	1		3	3	3		6	Case 2 \| 97	View
179	4013274	167306792, 167306822	3			3	4			4	Case 2 \| 30	View
180	4014833	7918959, 7919016	1	1		2	1	1		2	Case 2 \| 57	View
181	4014838	50840175, 50840198		2		2		2		2	Case 2 \| 23	View
182	4006773	28074826, 28074943		2		2	10	13		23	Case 2 \| 117	View
183	4500013	27472247, 27473034	2			2	9	12	1	22	Case 2 \| 787	View
184	4013964	52438125, 52438334	1	1		2	1	2		3	Case 2 \| 209	View
185	4007992	21746172, 21746379	2			2	15	2		17	Case 2 \| 207	View
186	4013269	26562626, 26562770		1	1	2	1	2	1	4	Case 2 \| 144	View
187	4011970	197190656, 197190876	2			2	6			6	Case 2 \| 220	View
188	4013266	2521778, 2522124		2		2	1	3		4	Case 2 \| 346	View
189	4013270	26562632, 26562770		1	1	2	1	2	1	4	Case 2 \| 138	View
190	4015770	158352553, 158352700	1			1	1			1	Case 2 \| 147	View
191	4014834	35483368, 35483699	1			1	2			2	Case 2 \| 331	View
192	4015763	35483522, 35483699	1			1	1			1	Case 2 \| 177	View
193	4016736	198537508, 198537659				0				0	Case 2 \| 151	View
194	4016740	198537586, 198537659				0				0	Case 2 \| 73	View
195	4500003	143178830, 143328870				0	8839	10516	2052	21407	Case 2 \| 150040	View
196	4011431	172349680, 172349855				0		2	5	7	Case 2 \| 175	View
197	4015769	42689754, 42689967				0		1		1	Case 2 \| 213	View
198	4016728	91816752, 91816957				0				0	Case 2 \| 205	View
199	4012557	148959881, 148960020				0	5			5	Case 2 \| 139	View
200	4016732	169590689, 169590761				0				0	Case 2 \| 72	View
201	4016737	198537517, 198537659				0				0	Case 2 \| 142	View
202	4016741	198537593, 198537659				0				0	Case 2 \| 66	View
203	4016729	146168450, 146168520				0				0	Case 2 \| 70	View
204	4014839	235839834, 235839921				0		2		2	Case 2 \| 87	View
205	4005531	178898226, 178898959				0	3	21	7	31	Case 2 \| 733	View
206	4016733	194516474, 194516535				0				0	Case 2 \| 61	View
207	4016738	198537558, 198537659				0				0	Case 2 \| 101	View
208	4016746	198537524, 198537659				0				0	Case 2 \| 135	View
209	4011433	234714668, 234714956				0		7		7	Case 2 \| 288	View
210	4015771	198537654, 198537742				0		1		1	Case 2 \| 88	View
211	4016730	150120412, 150120462				0				0	Case 2 \| 50	View
212	4014835	35483694, 35483780				0		2		2	Case 2 \| 86	View
213	4016735	198537355, 198537659				0				0	Case 2 \| 304	View
214	4016739	198537569, 198537659				0				0	Case 2 \| 90	View
215	4016747	229468574, 229468622				0				0	Case 2 \| 48	View
216	4015767	35483449, 35483699				0	1			1	Case 2 \| 250	View
217	4015925	97722078, 97722916				0				0	Case 2 \| 838	View
218	4016731	160321241, 160321355				0				0	Case 2 \| 114	View
219	4014103	149804440, 149805252				0		2		2	Case 2 \| 812	View
220	4014837	35484152, 35484304				0	2			2	Case 2 \| 152	View

Contents
Description

VIS-Cistrome factor overlapping Description

The overlaps between integration site and cistrome are retrieved by genome search engine GIGGLE (Ryan M Layer et al. 2018). We built three indexs including histone modification, transcription factor binding site and chromatin accessibility, then we searched the significance of shared genomic loci (overlaps) between query VIS and Cistrome (Rongbin Zheng et al. 2019) genome interval files. So one VIS may have several overlaps with multiple Cistrome factor-related samples, the associated factor and overlap amount could indicate that the virus integration site is a potentially functional DNA element.

HIV Overall Heatmap

This heatmap is an overall statistics for HIV VIS-Cistrome factor overlapped records by chromosome. The darker the red, the greater the overlapped records number. The user can view specific number by moving mouse pointer.

Browse data by Chromosome or Factor

The user can browse HIV VIS-Cistrome factor overlapped records data by specific chromosome or statistics histogram for specific Cistrome factor when users click the chromosome or Cistrome factor the user are interested in.

VIS locations with VIS-cistrome overlap information and VIS details for each chromosome

This table showed the VIS locations with VIS-cistrome overlap information and VIS details for each chromosome, you can click green button with number which indicates the overlapped records of this VIS and 3 cistrome factor (histone modification, transcription factor binding site and chromatin accessibility) to inspect details of cistrome sample and factor information, you can click "Detail" button to inspect other information of this VIS.

Case 1
： The deletion of human fragments during the integration event.

Case 2
： Due to the experimental method/design, two viral insertion positions were provided in the literature.
Length:
~40 bp

41 bp~1000 bp

1001 bp~


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