HIV VIS-Cistrome Factor Overlapped Record Details

This pages show details of Cistrome factor-ralated samples which overlapped this VIS.
The cistrome refers to "the set of cis-acting targets of a trans-acting factor on a genome-wide scale."

Show overlaps from virus related biological source

Factor Rank on this VIS	Factor Name	Overlapped Records	Details
1	TERC	2	View
2	ZNF680	2	View
3	NFKB1	2	View
4	NFKB2	2	View
5	BCL6	1	View
6	BMI1	1	View
7	STAT5B	1	View

> Overlapped records detail between VIS [DVID: 4004178] and all transcription factor binding site :

GSMID or ENCODE	Cell line	Cell type	Tissue type	Factor
GSM820430	HeLa	Epithelium	Cervix	TERC [Search on ENCODE]
GSM820437	HeLa	Epithelium	Cervix	TERC [Search on ENCODE]
GSM763404	OCI-Ly1	B cell lymphoma	Bone Marrow	BCL6 [Search on ENCODE]
GSM1138594	DU145	Epithelium	Prostate	BMI1 [Search on ENCODE]
GSM671402	None	Lymphocyte	Blood	STAT5B [Search on ENCODE]
ENCSR307CKC_1	HEK293	Epithelium	Embryonic Kidney	ZNF680 [Search on ENCODE]
GSM1556335	L1236	Hodgkin Lymphoma Cell	None	NFKB1 [Search on ENCODE]
GSM1556336	L1236	Hodgkin Lymphoma Cell	None	NFKB1 [Search on ENCODE]
GSM2466629	293T	None	None	ZNF680 [Search on ENCODE]
GSM1556338	L1236	Hodgkin Lymphoma Cell	None	NFKB2 [Search on ENCODE]
GSM1556337	L1236	Hodgkin Lymphoma Cell	None	NFKB2 [Search on ENCODE]

Contents
Description

Table Description

This table at top of page is factor ranked by overlap number. The overlap number refers to the overlapping count between VIS selected and one sepecific cistrome factor. The user can click biological source filter with blue button to keep the overlaps which are associated with virus-related diseases based on cistrome sample's biological source.

Overlap

An overlap means a match between VIS and 1 of 3 Cistrome data (histone modification, transcription factor binding site and chromatin accessibility), more specifically, this match includes at least 1 overlap between this VIS and 1 Cistrome factor-related sample from 1 of 3 Cistrome factor data. So one VIS may have several overlaps with multiple Cistrome factor-related samples, the associated factor and overlap amount of samples could indicate that the virus integration site is a potentially functional DNA element.