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HIV VIS-Cistrome Factor Overlapped Record Details

This pages show details of Cistrome factor-ralated samples which overlapped this VIS.
The cistrome refers to "the set of cis-acting targets of a trans-acting factor on a genome-wide scale."


Show overlaps from virus related biological source
VIS [DVID: 4000049] Location [chr1: 8510541] (GRCh38)
Factor Rank on this VIS Factor Name Overlapped Records Details
1 STAG1 15 View
2 EP300 10 View
3 H2AZ 9 View
4 NR3C1 6 View
5 POLR2A 4 View
6 KLF15 3 View
7 FOXA1 3 View
8 KMT2A 3 View
9 AR 3 View
10 E2F7 2 View
11 CREBBP 2 View
12 FLI1 2 View
13 NIPBL 2 View
14 JUND 2 View
15 NFIC 2 View
16 MAX 2 View
17 BRD4 1 View
18 RXRA 1 View
19 BCLAF1 1 View
20 RUNX1 1 View
21 PBX3 1 View
22 GATA3 1 View
23 RNF2 1 View
24 TCF12 1 View
25 TERF1 1 View
26 KLF11 1 View
27 CEBPB 1 View
28 FOXA2 1 View
29 RAD21 1 View
30 MXI1 1 View
31 MEF2B 1 View
32 YAP1 1 View
33 RAG2 1 View
34 YY1 1 View
35 FOSL2 1 View
36 CTCF 1 View
37 TEAD4 1 View
38 IKZF1 1 View
39 POU5F1 1 View
40 FOXM1 1 View
41 BHLHE40 1 View
42 MEF2A 1 View


> Overlapped records detail between VIS [DVID: 4000049] and transcription factor binding site [STAG1]:


GSMID or ENCODE Cell line Cell type Tissue type Factor
GSM1233911 GM12878 B Lymphocyte Blood STAG1 [Search on ENCODE]
GSM1233913 GM12878 B Lymphocyte Blood STAG1 [Search on ENCODE]
GSM1233953 GM12891 Lymphoblastoid Blood STAG1 [Search on ENCODE]
GSM1233954 GM12891 Lymphoblastoid Blood STAG1 [Search on ENCODE]
GSM1233975 GM12892 Lymphoblastoid Blood STAG1 [Search on ENCODE]
GSM1233976 GM12892 Lymphoblastoid Blood STAG1 [Search on ENCODE]
GSM1233991 GM18486 Lymphoblastoid Blood STAG1 [Search on ENCODE]
GSM1234076 GM19193 Lymphoblastoid Blood STAG1 [Search on ENCODE]
GSM1234098 GM19238 Lymphoblastoid Blood STAG1 [Search on ENCODE]
GSM1234120 GM19239 Lymphoblastoid Blood STAG1 [Search on ENCODE]
GSM1234143 GM19240 Lymphoblastoid Blood STAG1 [Search on ENCODE]
GSM1234160 GM2255 Lymphoblastoid Blood STAG1 [Search on ENCODE]
GSM1234179 GM2588 Lymphoblastoid Blood STAG1 [Search on ENCODE]
GSM1234197 GM2610 Lymphoblastoid Blood STAG1 [Search on ENCODE]
GSM1234237 MS1 Lymphoblastoid Blood STAG1 [Search on ENCODE]
Contents
Description
  • Table Description
This table at top of page is factor ranked by overlap number. The overlap number refers to the overlapping count between VIS selected and one sepecific cistrome factor. The user can click biological source filter with blue button to keep the overlaps which are associated with virus-related diseases based on cistrome sample's biological source.
  • Overlap
An overlap means a match between VIS and 1 of 3 Cistrome data (histone modification, transcription factor binding site and chromatin accessibility), more specifically, this match includes at least 1 overlap between this VIS and 1 Cistrome factor-related sample from 1 of 3 Cistrome factor data. So one VIS may have several overlaps with multiple Cistrome factor-related samples, the associated factor and overlap amount of samples could indicate that the virus integration site is a potentially functional DNA element.