HIV VIS-Cistrome Factor Overlapped Record Details

This pages show details of Cistrome factor-ralated samples which overlapped this VIS.
The cistrome refers to "the set of cis-acting targets of a trans-acting factor on a genome-wide scale."


Show overlaps from virus related biological source
VIS [DVID: 4000049] Location [chr1: 8510541] (GRCh38)
Factor Rank on this VIS Factor Name Overlapped Records Details
1 STAG1 15 View
2 EP300 10 View
3 H2AZ 9 View
4 NR3C1 6 View
5 POLR2A 4 View
6 KMT2A 3 View
7 AR 3 View
8 KLF15 3 View
9 FOXA1 3 View
10 JUND 2 View
11 NFIC 2 View
12 MAX 2 View
13 E2F7 2 View
14 CREBBP 2 View
15 FLI1 2 View
16 NIPBL 2 View
17 YAP1 1 View
18 RAG2 1 View
19 YY1 1 View
20 FOSL2 1 View
21 CTCF 1 View
22 TEAD4 1 View
23 IKZF1 1 View
24 POU5F1 1 View
25 FOXM1 1 View
26 BHLHE40 1 View
27 MEF2A 1 View
28 BRD4 1 View
29 RXRA 1 View
30 BCLAF1 1 View
31 RUNX1 1 View
32 PBX3 1 View
33 GATA3 1 View
34 RNF2 1 View
35 TCF12 1 View
36 TERF1 1 View
37 KLF11 1 View
38 CEBPB 1 View
39 FOXA2 1 View
40 RAD21 1 View
41 MXI1 1 View
42 MEF2B 1 View


> Overlapped records detail between VIS [DVID: 4000049] and transcription factor binding site [RXRA]:


GSMID or ENCODE Cell line Cell type Tissue type Factor
GSM1010767 SK-N-SH Neuroblastoma cell Brain RXRA [Search on ENCODE]
Contents
Description
  • Table Description
This table at top of page is factor ranked by overlap number. The overlap number refers to the overlapping count between VIS selected and one sepecific cistrome factor. The user can click biological source filter with blue button to keep the overlaps which are associated with virus-related diseases based on cistrome sample's biological source.
  • Overlap
An overlap means a match between VIS and 1 of 3 Cistrome data (histone modification, transcription factor binding site and chromatin accessibility), more specifically, this match includes at least 1 overlap between this VIS and 1 Cistrome factor-related sample from 1 of 3 Cistrome factor data. So one VIS may have several overlaps with multiple Cistrome factor-related samples, the associated factor and overlap amount of samples could indicate that the virus integration site is a potentially functional DNA element.