HIV VIS-Cistrome Factor Overlapped Record Details

This pages show details of Cistrome factor-ralated samples which overlapped this VIS.
The cistrome refers to "the set of cis-acting targets of a trans-acting factor on a genome-wide scale."


Show overlaps from virus related biological source
VIS [DVID: 4000049] Location [chr1: 8510541] (GRCh38)
Factor Rank on this VIS Factor Name Overlapped Records Details
1 STAG1 15 View
2 EP300 10 View
3 H2AZ 9 View
4 NR3C1 6 View
5 POLR2A 4 View
6 KMT2A 3 View
7 AR 3 View
8 KLF15 3 View
9 FOXA1 3 View
10 MAX 2 View
11 E2F7 2 View
12 CREBBP 2 View
13 FLI1 2 View
14 NIPBL 2 View
15 JUND 2 View
16 NFIC 2 View
17 YY1 1 View
18 FOSL2 1 View
19 CTCF 1 View
20 TEAD4 1 View
21 IKZF1 1 View
22 POU5F1 1 View
23 FOXM1 1 View
24 BHLHE40 1 View
25 MEF2A 1 View
26 BRD4 1 View
27 RXRA 1 View
28 BCLAF1 1 View
29 RUNX1 1 View
30 PBX3 1 View
31 GATA3 1 View
32 RNF2 1 View
33 TCF12 1 View
34 TERF1 1 View
35 KLF11 1 View
36 CEBPB 1 View
37 FOXA2 1 View
38 RAD21 1 View
39 MXI1 1 View
40 MEF2B 1 View
41 YAP1 1 View
42 RAG2 1 View


> Overlapped records detail between VIS [DVID: 4000049] and transcription factor binding site [RAG2]:


GSMID or ENCODE Cell line Cell type Tissue type Factor
GSM1701807 None Thymocyte None RAG2 [Search on ENCODE]
Contents
Description
  • Table Description
This table at top of page is factor ranked by overlap number. The overlap number refers to the overlapping count between VIS selected and one sepecific cistrome factor. The user can click biological source filter with blue button to keep the overlaps which are associated with virus-related diseases based on cistrome sample's biological source.
  • Overlap
An overlap means a match between VIS and 1 of 3 Cistrome data (histone modification, transcription factor binding site and chromatin accessibility), more specifically, this match includes at least 1 overlap between this VIS and 1 Cistrome factor-related sample from 1 of 3 Cistrome factor data. So one VIS may have several overlaps with multiple Cistrome factor-related samples, the associated factor and overlap amount of samples could indicate that the virus integration site is a potentially functional DNA element.