HIV VIS-Cistrome Factor Overlapped Record Details

This pages show details of Cistrome factor-ralated samples which overlapped this VIS.
The cistrome refers to "the set of cis-acting targets of a trans-acting factor on a genome-wide scale."


Show overlaps from virus related biological source
VIS [DVID: 4000049] Location [chr1: 8510541] (GRCh38)
Factor Rank on this VIS Factor Name Overlapped Records Details
1 STAG1 15 View
2 EP300 10 View
3 H2AZ 9 View
4 NR3C1 6 View
5 POLR2A 4 View
6 KLF15 3 View
7 FOXA1 3 View
8 KMT2A 3 View
9 AR 3 View
10 NIPBL 2 View
11 JUND 2 View
12 NFIC 2 View
13 MAX 2 View
14 E2F7 2 View
15 CREBBP 2 View
16 FLI1 2 View
17 TERF1 1 View
18 KLF11 1 View
19 CEBPB 1 View
20 FOXA2 1 View
21 RAD21 1 View
22 MXI1 1 View
23 MEF2B 1 View
24 YAP1 1 View
25 RAG2 1 View
26 YY1 1 View
27 FOSL2 1 View
28 CTCF 1 View
29 TEAD4 1 View
30 IKZF1 1 View
31 POU5F1 1 View
32 FOXM1 1 View
33 BHLHE40 1 View
34 MEF2A 1 View
35 BRD4 1 View
36 RXRA 1 View
37 BCLAF1 1 View
38 RUNX1 1 View
39 PBX3 1 View
40 GATA3 1 View
41 RNF2 1 View
42 TCF12 1 View


> Overlapped records detail between VIS [DVID: 4000049] and transcription factor binding site [PBX3]:


GSMID or ENCODE Cell line Cell type Tissue type Factor
GSM1010887 SK-N-SH Neuroblastoma cell Brain PBX3 [Search on ENCODE]
Contents
Description
  • Table Description
This table at top of page is factor ranked by overlap number. The overlap number refers to the overlapping count between VIS selected and one sepecific cistrome factor. The user can click biological source filter with blue button to keep the overlaps which are associated with virus-related diseases based on cistrome sample's biological source.
  • Overlap
An overlap means a match between VIS and 1 of 3 Cistrome data (histone modification, transcription factor binding site and chromatin accessibility), more specifically, this match includes at least 1 overlap between this VIS and 1 Cistrome factor-related sample from 1 of 3 Cistrome factor data. So one VIS may have several overlaps with multiple Cistrome factor-related samples, the associated factor and overlap amount of samples could indicate that the virus integration site is a potentially functional DNA element.