HIV VIS-Cistrome Factor Overlapped Record Details

This pages show details of Cistrome factor-ralated samples which overlapped this VIS.
The cistrome refers to "the set of cis-acting targets of a trans-acting factor on a genome-wide scale."


Show overlaps from virus related biological source
VIS [DVID: 4000049] Location [chr1: 8510541] (GRCh38)
Factor Rank on this VIS Factor Name Overlapped Records Details
1 STAG1 15 View
2 EP300 10 View
3 H2AZ 9 View
4 NR3C1 6 View
5 POLR2A 4 View
6 AR 3 View
7 KLF15 3 View
8 FOXA1 3 View
9 KMT2A 3 View
10 E2F7 2 View
11 CREBBP 2 View
12 FLI1 2 View
13 NIPBL 2 View
14 JUND 2 View
15 NFIC 2 View
16 MAX 2 View
17 POU5F1 1 View
18 FOXM1 1 View
19 BHLHE40 1 View
20 MEF2A 1 View
21 BRD4 1 View
22 RXRA 1 View
23 BCLAF1 1 View
24 RUNX1 1 View
25 PBX3 1 View
26 GATA3 1 View
27 RNF2 1 View
28 TCF12 1 View
29 TERF1 1 View
30 KLF11 1 View
31 CEBPB 1 View
32 FOXA2 1 View
33 RAD21 1 View
34 MXI1 1 View
35 MEF2B 1 View
36 YAP1 1 View
37 RAG2 1 View
38 YY1 1 View
39 FOSL2 1 View
40 CTCF 1 View
41 TEAD4 1 View
42 IKZF1 1 View


> Overlapped records detail between VIS [DVID: 4000049] and transcription factor binding site [NR3C1]:


GSMID or ENCODE Cell line Cell type Tissue type Factor
GSM2519942 None None Muscle NR3C1 [Search on ENCODE]
GSM2519945 None None Muscle NR3C1 [Search on ENCODE]
GSM2519944 None None Muscle NR3C1 [Search on ENCODE]
GSM2519947 None None Muscle NR3C1 [Search on ENCODE]
GSM2519949 None None Muscle NR3C1 [Search on ENCODE]
GSM2519948 None None Muscle NR3C1 [Search on ENCODE]
Contents
Description
  • Table Description
This table at top of page is factor ranked by overlap number. The overlap number refers to the overlapping count between VIS selected and one sepecific cistrome factor. The user can click biological source filter with blue button to keep the overlaps which are associated with virus-related diseases based on cistrome sample's biological source.
  • Overlap
An overlap means a match between VIS and 1 of 3 Cistrome data (histone modification, transcription factor binding site and chromatin accessibility), more specifically, this match includes at least 1 overlap between this VIS and 1 Cistrome factor-related sample from 1 of 3 Cistrome factor data. So one VIS may have several overlaps with multiple Cistrome factor-related samples, the associated factor and overlap amount of samples could indicate that the virus integration site is a potentially functional DNA element.