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HIV VIS-Cistrome Factor Overlapped Record Details

This pages show details of Cistrome factor-ralated samples which overlapped this VIS.
The cistrome refers to "the set of cis-acting targets of a trans-acting factor on a genome-wide scale."


Show overlaps from virus related biological source
VIS [DVID: 4000049] Location [chr1: 8510541] (GRCh38)
Factor Rank on this VIS Factor Name Overlapped Records Details
1 STAG1 15 View
2 EP300 10 View
3 H2AZ 9 View
4 NR3C1 6 View
5 POLR2A 4 View
6 KLF15 3 View
7 FOXA1 3 View
8 KMT2A 3 View
9 AR 3 View
10 E2F7 2 View
11 CREBBP 2 View
12 FLI1 2 View
13 NIPBL 2 View
14 JUND 2 View
15 NFIC 2 View
16 MAX 2 View
17 RXRA 1 View
18 BCLAF1 1 View
19 RUNX1 1 View
20 PBX3 1 View
21 GATA3 1 View
22 RNF2 1 View
23 TCF12 1 View
24 TERF1 1 View
25 KLF11 1 View
26 CEBPB 1 View
27 FOXA2 1 View
28 RAD21 1 View
29 MXI1 1 View
30 MEF2B 1 View
31 YAP1 1 View
32 RAG2 1 View
33 YY1 1 View
34 FOSL2 1 View
35 CTCF 1 View
36 TEAD4 1 View
37 IKZF1 1 View
38 POU5F1 1 View
39 FOXM1 1 View
40 BHLHE40 1 View
41 MEF2A 1 View
42 BRD4 1 View


> Click to view overlapped records detail between VIS [DVID: 4000049] and all transcription factor binding site


Contents
Description
  • Table Description
This table at top of page is factor ranked by overlap number. The overlap number refers to the overlapping count between VIS selected and one sepecific cistrome factor. The user can click biological source filter with blue button to keep the overlaps which are associated with virus-related diseases based on cistrome sample's biological source.
  • Overlap
An overlap means a match between VIS and 1 of 3 Cistrome data (histone modification, transcription factor binding site and chromatin accessibility), more specifically, this match includes at least 1 overlap between this VIS and 1 Cistrome factor-related sample from 1 of 3 Cistrome factor data. So one VIS may have several overlaps with multiple Cistrome factor-related samples, the associated factor and overlap amount of samples could indicate that the virus integration site is a potentially functional DNA element.