HIV VIS-Cistrome Factor Overlapped Record Details

This pages show details of Cistrome factor-ralated samples which overlapped this VIS.
The cistrome refers to "the set of cis-acting targets of a trans-acting factor on a genome-wide scale."


Show overlaps from virus related biological source
VIS [DVID: 4000049] Location [chr1: 8510541] (GRCh38)
Factor Rank on this VIS Factor Name Overlapped Records Details
1 STAG1 15 View
2 EP300 10 View
3 H2AZ 9 View
4 NR3C1 6 View
5 POLR2A 4 View
6 AR 3 View
7 KLF15 3 View
8 FOXA1 3 View
9 KMT2A 3 View
10 MAX 2 View
11 E2F7 2 View
12 CREBBP 2 View
13 FLI1 2 View
14 NIPBL 2 View
15 JUND 2 View
16 NFIC 2 View
17 FOSL2 1 View
18 CTCF 1 View
19 TEAD4 1 View
20 IKZF1 1 View
21 POU5F1 1 View
22 FOXM1 1 View
23 BHLHE40 1 View
24 MEF2A 1 View
25 BRD4 1 View
26 RXRA 1 View
27 BCLAF1 1 View
28 RUNX1 1 View
29 PBX3 1 View
30 GATA3 1 View
31 RNF2 1 View
32 TCF12 1 View
33 TERF1 1 View
34 KLF11 1 View
35 CEBPB 1 View
36 FOXA2 1 View
37 RAD21 1 View
38 MXI1 1 View
39 MEF2B 1 View
40 YAP1 1 View
41 RAG2 1 View
42 YY1 1 View


> Overlapped records detail between VIS [DVID: 4000049] and transcription factor binding site [BRD4]:


GSMID or ENCODE Cell line Cell type Tissue type Factor
GSM2098180 IMR90 None None BRD4 [Search on ENCODE]
Contents
Description
  • Table Description
This table at top of page is factor ranked by overlap number. The overlap number refers to the overlapping count between VIS selected and one sepecific cistrome factor. The user can click biological source filter with blue button to keep the overlaps which are associated with virus-related diseases based on cistrome sample's biological source.
  • Overlap
An overlap means a match between VIS and 1 of 3 Cistrome data (histone modification, transcription factor binding site and chromatin accessibility), more specifically, this match includes at least 1 overlap between this VIS and 1 Cistrome factor-related sample from 1 of 3 Cistrome factor data. So one VIS may have several overlaps with multiple Cistrome factor-related samples, the associated factor and overlap amount of samples could indicate that the virus integration site is a potentially functional DNA element.