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HIV VIS-Cistrome Factor Overlapped Record Details

This pages show details of Cistrome factor-ralated samples which overlapped this VIS.
The cistrome refers to "the set of cis-acting targets of a trans-acting factor on a genome-wide scale."


Show overlaps from virus related biological source
VIS [DVID: 4000049] Location [chr1: 8510541] (GRCh38)
Factor Rank on this VIS Factor Name Overlapped Records Details
1 STAG1 15 View
2 EP300 10 View
3 H2AZ 9 View
4 NR3C1 6 View
5 POLR2A 4 View
6 KLF15 3 View
7 FOXA1 3 View
8 KMT2A 3 View
9 AR 3 View
10 E2F7 2 View
11 CREBBP 2 View
12 FLI1 2 View
13 NIPBL 2 View
14 JUND 2 View
15 NFIC 2 View
16 MAX 2 View
17 RXRA 1 View
18 BCLAF1 1 View
19 RUNX1 1 View
20 PBX3 1 View
21 GATA3 1 View
22 RNF2 1 View
23 TCF12 1 View
24 TERF1 1 View
25 KLF11 1 View
26 CEBPB 1 View
27 FOXA2 1 View
28 RAD21 1 View
29 MXI1 1 View
30 MEF2B 1 View
31 YAP1 1 View
32 RAG2 1 View
33 YY1 1 View
34 FOSL2 1 View
35 CTCF 1 View
36 TEAD4 1 View
37 IKZF1 1 View
38 POU5F1 1 View
39 FOXM1 1 View
40 BHLHE40 1 View
41 MEF2A 1 View
42 BRD4 1 View


> Overlapped records detail between VIS [DVID: 4000049] and all transcription factor binding site :


GSMID or ENCODE Cell line Cell type Tissue type Factor
GSM894077 U87 None Brain MAX [Search on ENCODE]
GSM896985 BJ Fibroblast Skin POU5F1 [Search on ENCODE]
GSM1126514 None CD14 cell None H2AZ [Search on ENCODE]
GSM929090 IMR90 Fibroblast Lung EP300 [Search on ENCODE]
GSM991660 IMR90 Fibroblast Lung E2F7 [Search on ENCODE]
GSM991661 IMR90 Fibroblast Lung E2F7 [Search on ENCODE]
GSM1113427 Kasumi-1 Myeloblast Blood RUNX1 [Search on ENCODE]
GSM1055812 IMR90 Fibroblast Lung EP300 [Search on ENCODE]
GSM1233911 GM12878 B Lymphocyte Blood STAG1 [Search on ENCODE]
GSM1233913 GM12878 B Lymphocyte Blood STAG1 [Search on ENCODE]
GSM1233953 GM12891 Lymphoblastoid Blood STAG1 [Search on ENCODE]
GSM1233954 GM12891 Lymphoblastoid Blood STAG1 [Search on ENCODE]
GSM1233975 GM12892 Lymphoblastoid Blood STAG1 [Search on ENCODE]
GSM1233976 GM12892 Lymphoblastoid Blood STAG1 [Search on ENCODE]
GSM1233991 GM18486 Lymphoblastoid Blood STAG1 [Search on ENCODE]
GSM1234076 GM19193 Lymphoblastoid Blood STAG1 [Search on ENCODE]
GSM1234098 GM19238 Lymphoblastoid Blood STAG1 [Search on ENCODE]
GSM1234120 GM19239 Lymphoblastoid Blood STAG1 [Search on ENCODE]
GSM1234143 GM19240 Lymphoblastoid Blood STAG1 [Search on ENCODE]
GSM1234160 GM2255 Lymphoblastoid Blood STAG1 [Search on ENCODE]
GSM1234179 GM2588 Lymphoblastoid Blood STAG1 [Search on ENCODE]
GSM1234197 GM2610 Lymphoblastoid Blood STAG1 [Search on ENCODE]
GSM1234237 MS1 Lymphoblastoid Blood STAG1 [Search on ENCODE]
GSM1295092 None Fibroblast Foreskin RNF2 [Search on ENCODE]
GSM1328844 LCL Lymphoblastoid Blood TERF1 [Search on ENCODE]
GSM1003476 None B Lymphocyte Blood H2AZ [Search on ENCODE]
GSM733767 GM12878 B Lymphocyte Blood H2AZ [Search on ENCODE]
GSM1003500 None Epithelium Mammary Gland H2AZ [Search on ENCODE]
GSM733760 None Myoblast Skeletal Muscle H2AZ [Search on ENCODE]
GSM1003505 NHDF-Ad Fibroblast Skin H2AZ [Search on ENCODE]
GSM1003488 NHEK Keratinocyte Skin H2AZ [Search on ENCODE]
GSM1003530 NHLF Fibroblast Lung H2AZ [Search on ENCODE]
GSM733766 None Osteoblast Bone H2AZ [Search on ENCODE]
GSM935519 IMR90 Fibroblast Lung CEBPB [Search on ENCODE]
GSM935624 IMR90 Fibroblast Lung RAD21 [Search on ENCODE]
GSM1003614 IMR90 Fibroblast Lung MXI1 [Search on ENCODE]
GSM1003632 SK-N-SH Neuroblastoma cell Brain JUND [Search on ENCODE]
GSM1003626 SK-N-SH Neuroblastoma cell Brain EP300 [Search on ENCODE]
GSM1010881 GM12878 B Lymphocyte Blood NFIC [Search on ENCODE]
GSM1010897 SK-N-SH Neuroblastoma cell Brain YY1 [Search on ENCODE]
GSM1010880 SK-N-SH Neuroblastoma cell Brain NFIC [Search on ENCODE]
GSM1010840 SK-N-SH Neuroblastoma cell Brain FOSL2 [Search on ENCODE]
GSM1010858 SK-N-SH Neuroblastoma cell Brain TEAD4 [Search on ENCODE]
GSM1010835 SK-N-SH Neuroblastoma cell Brain MAX [Search on ENCODE]
GSM1010750 SK-N-SH Neuroblastoma cell Brain FOXM1 [Search on ENCODE]
GSM1010901 SK-N-SH Neuroblastoma cell Brain JUND [Search on ENCODE]
GSM1010834 SK-N-SH Neuroblastoma cell Brain MEF2A [Search on ENCODE]
GSM1010817 SK-N-SH Neuroblastoma cell Brain POLR2A [Search on ENCODE]
GSM1010763 SK-N-SH Neuroblastoma cell Brain EP300 [Search on ENCODE]
GSM1010767 SK-N-SH Neuroblastoma cell Brain RXRA [Search on ENCODE]
GSM1010887 SK-N-SH Neuroblastoma cell Brain PBX3 [Search on ENCODE]
GSM1010738 SK-N-SH Neuroblastoma cell Brain GATA3 [Search on ENCODE]
GSM1010900 SK-N-SH Neuroblastoma cell Brain TCF12 [Search on ENCODE]
GSM803495 SK-N-SH_RA Neuron Brain EP300 [Search on ENCODE]
GSM1442789 IMR90 Fibroblast Lung EP300 [Search on ENCODE]
GSM1442790 IMR90 Fibroblast Lung EP300 [Search on ENCODE]
GSM1443813 hMADS-3 Adipocyte Adipose KLF11 [Search on ENCODE]
GSM1519151 Ramos B Lymphocyte None NIPBL [Search on ENCODE]
GSM1519152 Ramos B Lymphocyte None NIPBL [Search on ENCODE]
GSM1463462 VCaP Epithelium Prostate FOXA1 [Search on ENCODE]
GSM1463463 VCaP Epithelium Prostate FOXA1 [Search on ENCODE]
GSM1463464 VCaP Epithelium Prostate FOXA1 [Search on ENCODE]
GSM1647185 HEK293A None None MEF2B [Search on ENCODE]
GSM1696207 IMR90 Fibroblast Lung YAP1 [Search on ENCODE]
GSM1701807 None Thymocyte None RAG2 [Search on ENCODE]
GSM1934095 SEM Pre-B Lymphocyte None KMT2A [Search on ENCODE]
ENCSR146BGM_1 None None gastroesophageal sphincter CTCF [Search on ENCODE]
ENCSR874AFU_2 GM12878 B Lymphocyte Blood IKZF1 [Search on ENCODE]
ENCSR957KYB_1 IMR90 Fibroblast Lung BHLHE40 [Search on ENCODE]
GSM1586665 LNCaP Epithelium Prostate AR [Search on ENCODE]
GSM1586664 LNCaP Epithelium Prostate AR [Search on ENCODE]
GSM1586661 C4-2 None Prostate AR [Search on ENCODE]
GSM2098180 IMR90 None None BRD4 [Search on ENCODE]
GSM1970524 None Cortex Kidney EP300 [Search on ENCODE]
GSM803509 GM12878 B Lymphocyte Blood BCLAF1 [Search on ENCODE]
GSM2364550 None None Spleen KMT2A [Search on ENCODE]
GSM2364542 SEM B Lymphocyte None KMT2A [Search on ENCODE]
GSM2386723 None B Lymphocyte Tonsil CREBBP [Search on ENCODE]
GSM2386721 None B Lymphocyte Tonsil CREBBP [Search on ENCODE]
GSM2550216 None Fibroblast None EP300 [Search on ENCODE]
GSM2550217 None Fibroblast None POLR2A [Search on ENCODE]
GSM2519942 None None Muscle NR3C1 [Search on ENCODE]
GSM2519945 None None Muscle NR3C1 [Search on ENCODE]
GSM2519944 None None Muscle NR3C1 [Search on ENCODE]
GSM2519947 None None Muscle NR3C1 [Search on ENCODE]
GSM2519949 None None Muscle NR3C1 [Search on ENCODE]
GSM2519948 None None Muscle NR3C1 [Search on ENCODE]
GSM2436677 A673 Polygonal Muscle FLI1 [Search on ENCODE]
GSM2436676 A673 Polygonal Muscle FLI1 [Search on ENCODE]
GSM2519953 None None Muscle POLR2A [Search on ENCODE]
GSM2519950 None None Muscle KLF15 [Search on ENCODE]
GSM2519951 None None Muscle KLF15 [Search on ENCODE]
GSM2519959 None None Muscle KLF15 [Search on ENCODE]
GSM2977490 BJ Fibroblast Skin FOXA2 [Search on ENCODE]
GSM2550258 None Fibroblast None EP300 [Search on ENCODE]
GSM2550259 None Fibroblast None POLR2A [Search on ENCODE]
Contents
Description
  • Table Description
This table at top of page is factor ranked by overlap number. The overlap number refers to the overlapping count between VIS selected and one sepecific cistrome factor. The user can click biological source filter with blue button to keep the overlaps which are associated with virus-related diseases based on cistrome sample's biological source.
  • Overlap
An overlap means a match between VIS and 1 of 3 Cistrome data (histone modification, transcription factor binding site and chromatin accessibility), more specifically, this match includes at least 1 overlap between this VIS and 1 Cistrome factor-related sample from 1 of 3 Cistrome factor data. So one VIS may have several overlaps with multiple Cistrome factor-related samples, the associated factor and overlap amount of samples could indicate that the virus integration site is a potentially functional DNA element.