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HIV VIS-Cistrome Factor Overlapped Record Details

This pages show details of Cistrome factor-ralated samples which overlapped this VIS.
The cistrome refers to "the set of cis-acting targets of a trans-acting factor on a genome-wide scale."


Show overlaps from virus related biological source
VIS [DVID: 4004253] Location [chr1: 48149389] (GRCh38)
Factor Rank on this VIS Factor Name Overlapped Records Details
1 H3K9me3 37 View
2 H3K27me3 4 View
3 H3K9me2 1 View
4 H3K36me3 1 View


> Overlapped records detail between VIS [DVID: 4004253] and all histone modification :


GSMID or ENCODE Cell line Cell type Tissue type Factor
GSM669894 HUES6 Embryonic Stem Cell Embryo H3K9me3 [Search on ENCODE]
GSM669928 HUES64 Embryonic Stem Cell Embryo H3K9me3 [Search on ENCODE]
GSM916057 HUES64 Embryonic Stem Cell Embryo H3K9me3 [Search on ENCODE]
GSM1058785 None None Fetal Muscle Leg H3K9me3 [Search on ENCODE]
GSM1112788 None Smooth Muscle Cell Duodenum H3K9me3 [Search on ENCODE]
GSM1220571 None None Fetal Spinal Cord H3K9me3 [Search on ENCODE]
GSM1272753 iPS C1 iPSC None H3K9me3 [Search on ENCODE]
GSM1003519 HepG2 Epithelium Liver H3K9me3 [Search on ENCODE]
GSM788080 NT2-D1 None Embryo H3K9me3 [Search on ENCODE]
GSM788078 U2OS None Bone H3K9me3 [Search on ENCODE]
GSM1252299 None None Stomach H3K27me3 [Search on ENCODE]
GSM1252300 None None Stomach H3K27me3 [Search on ENCODE]
GSM1252301 None None Stomach H3K27me3 [Search on ENCODE]
GSM1252302 None None Stomach H3K27me3 [Search on ENCODE]
GSM1571899 LIS2 Embryonic Stem Cell Embryo H3K9me3 [Search on ENCODE]
GSM1571911 WIS2 Embryonic Stem Cell None H3K9me3 [Search on ENCODE]
GSM1571917 WIS2 Embryonic Stem Cell None H3K9me3 [Search on ENCODE]
GSM1702557 None None Cord blood H3K9me2 [Search on ENCODE]
GSM772742 None Mesenchymal Stem Cell Adipose H3K9me3 [Search on ENCODE]
GSM772756 HUES64 Embryonic Stem Cell Embryo H3K9me3 [Search on ENCODE]
GSM772759 None Mesenchymal Stem Cell Adipose H3K9me3 [Search on ENCODE]
GSM772780 HUES48 Embryonic Stem Cell Embryo H3K9me3 [Search on ENCODE]
GSM772813 None Mesenchymal Stem Cell Adipose H3K9me3 [Search on ENCODE]
GSM1574270 PT45-P1 None Pancreatic ductal H3K9me3 [Search on ENCODE]
GSM1574264 Capan-1 None Pancreatic ductal H3K9me3 [Search on ENCODE]
GSM1709282 U2OS None Bone H3K9me3 [Search on ENCODE]
GSM2357619 None Ewing sacroma None H3K9me3 [Search on ENCODE]
GSM772856 HUES64 Embryonic Stem Cell Embryo H3K9me3 [Search on ENCODE]
GSM2509487 K562 Leukemia None H3K9me3 [Search on ENCODE]
GSM772912 HUES64 Embryonic Stem Cell Embryo H3K36me3 [Search on ENCODE]
GSM2258880 MB436 None Breast H3K9me3 [Search on ENCODE]
GSM773023 None iPSC None H3K9me3 [Search on ENCODE]
GSM773049 None Haematopoietic Progenitor Cell Cord blood H3K9me3 [Search on ENCODE]
GSM2258808 SKBR-3 None Breast H3K9me3 [Search on ENCODE]
GSM2258772 MB361 None Breast H3K9me3 [Search on ENCODE]
GSM2509490 K562 Leukemia None H3K9me3 [Search on ENCODE]
GSM2258754 ZR-75-1 None Breast H3K9me3 [Search on ENCODE]
GSM2258719 MCF-10A Epithelium Breast H3K9me3 [Search on ENCODE]
GSM2258736 MCF-7 Epithelium Breast H3K9me3 [Search on ENCODE]
GSM2509506 K562 Leukemia None H3K9me3 [Search on ENCODE]
GSM2258899 MB468 None Breast H3K9me3 [Search on ENCODE]
GSM2258898 MB468 None Breast H3K9me3 [Search on ENCODE]
GSM605325 H1 Embryonic Stem Cell Embryo H3K9me3 [Search on ENCODE]
Contents
Description
  • Table Description
This table at top of page is factor ranked by overlap number. The overlap number refers to the overlapping count between VIS selected and one sepecific cistrome factor. The user can click biological source filter with blue button to keep the overlaps which are associated with virus-related diseases based on cistrome sample's biological source.
  • Overlap
An overlap means a match between VIS and 1 of 3 Cistrome data (histone modification, transcription factor binding site and chromatin accessibility), more specifically, this match includes at least 1 overlap between this VIS and 1 Cistrome factor-related sample from 1 of 3 Cistrome factor data. So one VIS may have several overlaps with multiple Cistrome factor-related samples, the associated factor and overlap amount of samples could indicate that the virus integration site is a potentially functional DNA element.