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HIV VIS-Cistrome Factor Overlapped Record Details

This pages show details of Cistrome factor-ralated samples which overlapped this VIS.
The cistrome refers to "the set of cis-acting targets of a trans-acting factor on a genome-wide scale."


Show overlaps from virus related biological source
VIS [DVID: 4000556] Location [chr1: 35943038] (GRCh38)
Factor Rank on this VIS Factor Name Overlapped Records Details
1 STAG1 9 View
2 PAX5 3 View
3 SPI1 3 View
4 ERG 2 View
5 MYB 2 View
6 JUNB 2 View
7 T 2 View
8 ZMYM3 2 View
9 CDK8 2 View
10 TCF7L1 1 View
11 EED 1 View
12 PBX2 1 View
13 PML 1 View
14 NBN 1 View
15 RELA 1 View
16 CBX5 1 View
17 BATF 1 View
18 TARDBP 1 View
19 NFIC 1 View
20 ZNF770 1 View
21 ELF1 1 View
22 BCLAF1 1 View
23 RUNX3 1 View
24 FLI1 1 View
25 CREB1 1 View
26 MTA3 1 View
27 CDK9 1 View
28 POU2F2 1 View
29 ETV6 1 View
30 TRIM28 1 View
31 ZNF441 1 View
32 RUNX1 1 View
33 BRD4 1 View


> Overlapped records detail between VIS [DVID: 4000556] and transcription factor binding site [POU2F2]:


GSMID or ENCODE Cell line Cell type Tissue type Factor
GSM803397 GM12891 Lymphoblastoid Blood POU2F2 [Search on ENCODE]
Contents
Description
  • Table Description
This table at top of page is factor ranked by overlap number. The overlap number refers to the overlapping count between VIS selected and one sepecific cistrome factor. The user can click biological source filter with blue button to keep the overlaps which are associated with virus-related diseases based on cistrome sample's biological source.
  • Overlap
An overlap means a match between VIS and 1 of 3 Cistrome data (histone modification, transcription factor binding site and chromatin accessibility), more specifically, this match includes at least 1 overlap between this VIS and 1 Cistrome factor-related sample from 1 of 3 Cistrome factor data. So one VIS may have several overlaps with multiple Cistrome factor-related samples, the associated factor and overlap amount of samples could indicate that the virus integration site is a potentially functional DNA element.