HIV VIS-Cistrome Factor Overlapped Record Details

This pages show details of Cistrome factor-ralated samples which overlapped this VIS.
The cistrome refers to "the set of cis-acting targets of a trans-acting factor on a genome-wide scale."


Show overlaps from virus related biological source
VIS [DVID: 4000556] Location [chr1: 35943038] (GRCh38)
Factor Rank on this VIS Factor Name Overlapped Records Details
1 STAG1 9 View
2 PAX5 3 View
3 SPI1 3 View
4 JUNB 2 View
5 T 2 View
6 ZMYM3 2 View
7 CDK8 2 View
8 ERG 2 View
9 MYB 2 View
10 PML 1 View
11 NBN 1 View
12 RELA 1 View
13 CBX5 1 View
14 BATF 1 View
15 TARDBP 1 View
16 NFIC 1 View
17 ZNF770 1 View
18 ELF1 1 View
19 BCLAF1 1 View
20 RUNX3 1 View
21 FLI1 1 View
22 CREB1 1 View
23 MTA3 1 View
24 CDK9 1 View
25 POU2F2 1 View
26 ETV6 1 View
27 TRIM28 1 View
28 ZNF441 1 View
29 RUNX1 1 View
30 BRD4 1 View
31 TCF7L1 1 View
32 EED 1 View
33 PBX2 1 View


> Click to view overlapped records detail between VIS [DVID: 4000556] and all transcription factor binding site


Contents
Description
  • Table Description
This table at top of page is factor ranked by overlap number. The overlap number refers to the overlapping count between VIS selected and one sepecific cistrome factor. The user can click biological source filter with blue button to keep the overlaps which are associated with virus-related diseases based on cistrome sample's biological source.
  • Overlap
An overlap means a match between VIS and 1 of 3 Cistrome data (histone modification, transcription factor binding site and chromatin accessibility), more specifically, this match includes at least 1 overlap between this VIS and 1 Cistrome factor-related sample from 1 of 3 Cistrome factor data. So one VIS may have several overlaps with multiple Cistrome factor-related samples, the associated factor and overlap amount of samples could indicate that the virus integration site is a potentially functional DNA element.