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HIV VIS-Cistrome Factor Overlapped Record Details

This pages show details of Cistrome factor-ralated samples which overlapped this VIS.
The cistrome refers to "the set of cis-acting targets of a trans-acting factor on a genome-wide scale."


Show overlaps from virus related biological source
VIS [DVID: 4000556] Location [chr1: 35943038] (GRCh38)
Factor Rank on this VIS Factor Name Overlapped Records Details
1 STAG1 9 View
2 SPI1 3 View
3 PAX5 3 View
4 ZMYM3 2 View
5 CDK8 2 View
6 ERG 2 View
7 MYB 2 View
8 JUNB 2 View
9 T 2 View
10 MTA3 1 View
11 CDK9 1 View
12 POU2F2 1 View
13 ETV6 1 View
14 TRIM28 1 View
15 ZNF441 1 View
16 RUNX1 1 View
17 BRD4 1 View
18 TCF7L1 1 View
19 EED 1 View
20 PBX2 1 View
21 PML 1 View
22 NBN 1 View
23 RELA 1 View
24 CBX5 1 View
25 BATF 1 View
26 TARDBP 1 View
27 NFIC 1 View
28 ZNF770 1 View
29 ELF1 1 View
30 BCLAF1 1 View
31 RUNX3 1 View
32 FLI1 1 View
33 CREB1 1 View


> Overlapped records detail between VIS [DVID: 4000556] and transcription factor binding site [CBX5]:


GSMID or ENCODE Cell line Cell type Tissue type Factor
ENCSR372GIN_1 GM12878 B Lymphocyte Blood CBX5 [Search on ENCODE]
Contents
Description
  • Table Description
This table at top of page is factor ranked by overlap number. The overlap number refers to the overlapping count between VIS selected and one sepecific cistrome factor. The user can click biological source filter with blue button to keep the overlaps which are associated with virus-related diseases based on cistrome sample's biological source.
  • Overlap
An overlap means a match between VIS and 1 of 3 Cistrome data (histone modification, transcription factor binding site and chromatin accessibility), more specifically, this match includes at least 1 overlap between this VIS and 1 Cistrome factor-related sample from 1 of 3 Cistrome factor data. So one VIS may have several overlaps with multiple Cistrome factor-related samples, the associated factor and overlap amount of samples could indicate that the virus integration site is a potentially functional DNA element.