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HIV VIS-Cistrome Factor Overlapped Record Details

This pages show details of Cistrome factor-ralated samples which overlapped this VIS.
The cistrome refers to "the set of cis-acting targets of a trans-acting factor on a genome-wide scale."


Show overlaps from virus related biological source
VIS [DVID: 4000556] Location [chr1: 35943038] (GRCh38)
Factor Rank on this VIS Factor Name Overlapped Records Details
1 STAG1 9 View
2 PAX5 3 View
3 SPI1 3 View
4 T 2 View
5 ZMYM3 2 View
6 CDK8 2 View
7 ERG 2 View
8 MYB 2 View
9 JUNB 2 View
10 ZNF770 1 View
11 ELF1 1 View
12 BCLAF1 1 View
13 RUNX3 1 View
14 FLI1 1 View
15 CREB1 1 View
16 MTA3 1 View
17 CDK9 1 View
18 POU2F2 1 View
19 ETV6 1 View
20 TRIM28 1 View
21 ZNF441 1 View
22 RUNX1 1 View
23 BRD4 1 View
24 TCF7L1 1 View
25 EED 1 View
26 PBX2 1 View
27 PML 1 View
28 NBN 1 View
29 RELA 1 View
30 CBX5 1 View
31 BATF 1 View
32 TARDBP 1 View
33 NFIC 1 View


> Overlapped records detail between VIS [DVID: 4000556] and transcription factor binding site [BRD4]:


GSMID or ENCODE Cell line Cell type Tissue type Factor
GSM2643541 LCL Lymphoblastoid Blood BRD4 [Search on ENCODE]
Contents
Description
  • Table Description
This table at top of page is factor ranked by overlap number. The overlap number refers to the overlapping count between VIS selected and one sepecific cistrome factor. The user can click biological source filter with blue button to keep the overlaps which are associated with virus-related diseases based on cistrome sample's biological source.
  • Overlap
An overlap means a match between VIS and 1 of 3 Cistrome data (histone modification, transcription factor binding site and chromatin accessibility), more specifically, this match includes at least 1 overlap between this VIS and 1 Cistrome factor-related sample from 1 of 3 Cistrome factor data. So one VIS may have several overlaps with multiple Cistrome factor-related samples, the associated factor and overlap amount of samples could indicate that the virus integration site is a potentially functional DNA element.