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HIV VIS-Cistrome Factor Overlapped Record Details

This pages show details of Cistrome factor-ralated samples which overlapped this VIS.
The cistrome refers to "the set of cis-acting targets of a trans-acting factor on a genome-wide scale."


Show overlaps from virus related biological source
VIS [DVID: 4000556] Location [chr1: 35943038] (GRCh38)
Factor Rank on this VIS Factor Name Overlapped Records Details
1 STAG1 9 View
2 PAX5 3 View
3 SPI1 3 View
4 JUNB 2 View
5 T 2 View
6 ZMYM3 2 View
7 CDK8 2 View
8 ERG 2 View
9 MYB 2 View
10 PBX2 1 View
11 PML 1 View
12 NBN 1 View
13 RELA 1 View
14 CBX5 1 View
15 BATF 1 View
16 TARDBP 1 View
17 NFIC 1 View
18 ZNF770 1 View
19 ELF1 1 View
20 BCLAF1 1 View
21 RUNX3 1 View
22 FLI1 1 View
23 CREB1 1 View
24 MTA3 1 View
25 CDK9 1 View
26 POU2F2 1 View
27 ETV6 1 View
28 TRIM28 1 View
29 ZNF441 1 View
30 RUNX1 1 View
31 BRD4 1 View
32 TCF7L1 1 View
33 EED 1 View


> Overlapped records detail between VIS [DVID: 4000556] and transcription factor binding site [BCLAF1]:


GSMID or ENCODE Cell line Cell type Tissue type Factor
GSM803509 GM12878 B Lymphocyte Blood BCLAF1 [Search on ENCODE]
Contents
Description
  • Table Description
This table at top of page is factor ranked by overlap number. The overlap number refers to the overlapping count between VIS selected and one sepecific cistrome factor. The user can click biological source filter with blue button to keep the overlaps which are associated with virus-related diseases based on cistrome sample's biological source.
  • Overlap
An overlap means a match between VIS and 1 of 3 Cistrome data (histone modification, transcription factor binding site and chromatin accessibility), more specifically, this match includes at least 1 overlap between this VIS and 1 Cistrome factor-related sample from 1 of 3 Cistrome factor data. So one VIS may have several overlaps with multiple Cistrome factor-related samples, the associated factor and overlap amount of samples could indicate that the virus integration site is a potentially functional DNA element.