HIV VIS-Cistrome Factor Overlapped Record Details

This pages show details of Cistrome factor-ralated samples which overlapped this VIS.
The cistrome refers to "the set of cis-acting targets of a trans-acting factor on a genome-wide scale."

Show overlaps from virus related biological source

Factor Rank on this VIS	Factor Name	Overlapped Records	Details
1	H3K4me1	7	View
2	H3K27ac	2	View
3	H3K9ac	2	View
4	H3K4me2	2	View

> Overlapped records detail between VIS [DVID: 4008586] and all histone modification :

GSMID or ENCODE	Cell line	Cell type	Tissue type	Factor
GSM1102793	None	Monocyte	Blood	H3K4me1 [Search on ENCODE]
GSM1027296	None	B Lymphocyte	Spleen	H3K4me1 [Search on ENCODE]
GSM1233958	GM12892	Lymphoblastoid	Blood	H3K27ac [Search on ENCODE]
GSM1234101	GM19239	Lymphoblastoid	Blood	H3K27ac [Search on ENCODE]
GSM1252279	None	None	Stomach	H3K4me1 [Search on ENCODE]
GSM1252291	None	None	Stomach	H3K4me1 [Search on ENCODE]
GSM1702515	None	None	Bone Marrow	H3K9ac [Search on ENCODE]
GSM1702516	None	None	Bone Marrow	H3K9ac [Search on ENCODE]
ENCSR428DFL_1	A549	Epithelium	Lung	H3K4me2 [Search on ENCODE]
GSM2058760	LNCaP	Epithelium	Prostate	H3K4me2 [Search on ENCODE]
GSM773038	None	None	Cord blood	H3K4me1 [Search on ENCODE]
GSM2476344	501-Mel	melanoma	None	H3K4me1 [Search on ENCODE]
GSM2644054	None	Hepatocyte	None	H3K4me1 [Search on ENCODE]

Contents
Description

Table Description

This table at top of page is factor ranked by overlap number. The overlap number refers to the overlapping count between VIS selected and one sepecific cistrome factor. The user can click biological source filter with blue button to keep the overlaps which are associated with virus-related diseases based on cistrome sample's biological source.

Overlap

An overlap means a match between VIS and 1 of 3 Cistrome data (histone modification, transcription factor binding site and chromatin accessibility), more specifically, this match includes at least 1 overlap between this VIS and 1 Cistrome factor-related sample from 1 of 3 Cistrome factor data. So one VIS may have several overlaps with multiple Cistrome factor-related samples, the associated factor and overlap amount of samples could indicate that the virus integration site is a potentially functional DNA element.