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HIV VIS-Cistrome Factor Overlapped Record Details

This pages show details of Cistrome factor-ralated samples which overlapped this VIS.
The cistrome refers to "the set of cis-acting targets of a trans-acting factor on a genome-wide scale."


Show overlaps from virus related biological source
VIS [DVID: 4003350] Location [chr1: 31778810] (GRCh38)
Factor Rank on this VIS Factor Name Overlapped Records Details
1 CTCF 54 View
2 CTCFL 4 View
3 RAD21 1 View
4 BCOR 1 View
5 ZMYM3 1 View
6 ESR1 1 View


> Overlapped records detail between VIS [DVID: 4003350] and transcription factor binding site [CTCF]:


GSMID or ENCODE Cell line Cell type Tissue type Factor
GSM646432 K562 Erythroblast Bone Marrow CTCF [Search on ENCODE]
GSM646433 K562 Erythroblast Bone Marrow CTCF [Search on ENCODE]
GSM822276 GM19240 Lymphoblastoid Blood CTCF [Search on ENCODE]
GSM822271 NHEK Keratinocyte Skin CTCF [Search on ENCODE]
GSM822299 GM12892 Lymphoblastoid Blood CTCF [Search on ENCODE]
GSM808772 H54 Glial Cell Brain CTCF [Search on ENCODE]
GSM808752 MCF-7 Epithelium Breast CTCF [Search on ENCODE]
GSM849304 GM12871 B Lymphocyte Blood CTCF [Search on ENCODE]
GSM1224656 K562 Erythroblast Bone Marrow CTCF [Search on ENCODE]
GSM1224659 K562 Erythroblast Bone Marrow CTCF [Search on ENCODE]
GSM1233888 GM12878 B Lymphocyte Blood CTCF [Search on ENCODE]
GSM1233934 GM12891 Lymphoblastoid Blood CTCF [Search on ENCODE]
GSM1233955 GM12892 Lymphoblastoid Blood CTCF [Search on ENCODE]
GSM1233956 GM12892 Lymphoblastoid Blood CTCF [Search on ENCODE]
GSM1234079 GM19238 Lymphoblastoid Blood CTCF [Search on ENCODE]
GSM1234163 GM2588 Lymphoblastoid Blood CTCF [Search on ENCODE]
GSM1234180 GM2610 Lymphoblastoid Blood CTCF [Search on ENCODE]
GSM1234181 GM2610 Lymphoblastoid Blood CTCF [Search on ENCODE]
GSM1234218 MS1 Lymphoblastoid Blood CTCF [Search on ENCODE]
GSM1003582 A549 Epithelium Lung CTCF [Search on ENCODE]
GSM1003581 A549 Epithelium Lung CTCF [Search on ENCODE]
GSM1003464 DND-41 T Lymphocyte Blood CTCF [Search on ENCODE]
GSM733719 K562 Erythroblast Bone Marrow CTCF [Search on ENCODE]
GSM822289 A549 Epithelium Lung CTCF [Search on ENCODE]
GSM822303 None None Brain CTCF [Search on ENCODE]
GSM749668 HEK293 Epithelium Embryonic Kidney CTCF [Search on ENCODE]
GSM822311 K562 Erythroblast Bone Marrow CTCF [Search on ENCODE]
GSM935407 K562 Erythroblast Bone Marrow CTCF [Search on ENCODE]
GSM749690 K562 Erythroblast Bone Marrow CTCF [Search on ENCODE]
GSM822305 MCF-7 Epithelium Breast CTCF [Search on ENCODE]
GSM749768 WERI-Rb-1 None Eye CTCF [Search on ENCODE]
GSM1010820 K562 Erythroblast Bone Marrow CTCF [Search on ENCODE]
GSM1224673 K562 Erythroblast Bone Marrow CTCF [Search on ENCODE]
GSM1224674 K562 Erythroblast Bone Marrow CTCF [Search on ENCODE]
GSM1273199 None Erythroid Progenitor Cell Blood CTCF [Search on ENCODE]
GSM489296 GM12892 Lymphoblastoid Blood CTCF [Search on ENCODE]
GSM489298 GM19240 Lymphoblastoid Blood CTCF [Search on ENCODE]
GSM1267206 H1 Embryonic Stem Cell Embryo CTCF [Search on ENCODE]
GSM1267207 H1 Embryonic Stem Cell Embryo CTCF [Search on ENCODE]
GSM1267210 H1 Embryonic Stem Cell Embryo CTCF [Search on ENCODE]
GSM1689152 Jurkat T Lymphocyte Blood CTCF [Search on ENCODE]
GSM1782701 K562 Erythroblast Bone Marrow CTCF [Search on ENCODE]
GSM1817654 K562 Erythroblast Bone Marrow CTCF [Search on ENCODE]
GSM1817666 MCF-7 Epithelium Breast CTCF [Search on ENCODE]
GSM1817667 MCF-7 Epithelium Breast CTCF [Search on ENCODE]
GSM2214099 Rh4 rhabdomyosarcoma None CTCF [Search on ENCODE]
GSM624080 K562 Erythroblast Bone Marrow CTCF [Search on ENCODE]
GSM624081 NHEK Keratinocyte Skin CTCF [Search on ENCODE]
GSM518375 H1 Embryonic Stem Cell Embryo CTCF [Search on ENCODE]
GSM2747766 HeLa Cervical Carcinoma None CTCF [Search on ENCODE]
GSM2730054 JHU-011 Erythroblast Fetal Liver CTCF [Search on ENCODE]
GSM2730056 None Erythroblast Blood CTCF [Search on ENCODE]
GSM2730057 JHU-011 Erythroblast Blood CTCF [Search on ENCODE]
GSM2870998 SK-N-AS Neuroblast Brain CTCF [Search on ENCODE]
Contents
Description
  • Table Description
This table at top of page is factor ranked by overlap number. The overlap number refers to the overlapping count between VIS selected and one sepecific cistrome factor. The user can click biological source filter with blue button to keep the overlaps which are associated with virus-related diseases based on cistrome sample's biological source.
  • Overlap
An overlap means a match between VIS and 1 of 3 Cistrome data (histone modification, transcription factor binding site and chromatin accessibility), more specifically, this match includes at least 1 overlap between this VIS and 1 Cistrome factor-related sample from 1 of 3 Cistrome factor data. So one VIS may have several overlaps with multiple Cistrome factor-related samples, the associated factor and overlap amount of samples could indicate that the virus integration site is a potentially functional DNA element.