HIV VIS-Cistrome Factor Overlapped Record Details

This pages show details of Cistrome factor-ralated samples which overlapped this VIS.
The cistrome refers to "the set of cis-acting targets of a trans-acting factor on a genome-wide scale."

Show overlaps from virus related biological source

Factor Rank on this VIS	Factor Name	Overlapped Records	Details
1	H3K4me3	60	View
2	H3K4me2	23	View
3	H3K4me1	8	View
4	H3K27ac	3	View
5	H3ac	1	View

> Overlapped records detail between VIS [DVID: 4001936] and histone modification [H3K4me1]:

GSMID or ENCODE	Cell line	Cell type	Tissue type	Factor
GSM670033	None	None	Cingulate Gyrus	H3K4me1 [Search on ENCODE]
GSM1003526	NHDF-Ad	Fibroblast	Skin	H3K4me1 [Search on ENCODE]
GSM1435520	GM12878	B Lymphocyte	Blood	H3K4me1 [Search on ENCODE]
GSM772745	None	Mesenchymal Stem Cell	Adipose	H3K4me1 [Search on ENCODE]
GSM772748	None	Mesenchymal Stem Cell	Adipose	H3K4me1 [Search on ENCODE]
GSM772793	HUES48	Embryonic Stem Cell	Embryo	H3K4me1 [Search on ENCODE]
GSM2120705	SH-SY5Y	Neuroblastoma cell	None	H3K4me1 [Search on ENCODE]
GSM2058063	COLO 205	None	None	H3K4me1 [Search on ENCODE]

Contents
Description

Table Description

This table at top of page is factor ranked by overlap number. The overlap number refers to the overlapping count between VIS selected and one sepecific cistrome factor. The user can click biological source filter with blue button to keep the overlaps which are associated with virus-related diseases based on cistrome sample's biological source.

Overlap

An overlap means a match between VIS and 1 of 3 Cistrome data (histone modification, transcription factor binding site and chromatin accessibility), more specifically, this match includes at least 1 overlap between this VIS and 1 Cistrome factor-related sample from 1 of 3 Cistrome factor data. So one VIS may have several overlaps with multiple Cistrome factor-related samples, the associated factor and overlap amount of samples could indicate that the virus integration site is a potentially functional DNA element.