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HIV VIS-Cistrome Factor Overlapped Record Details

This pages show details of Cistrome factor-ralated samples which overlapped this VIS.
The cistrome refers to "the set of cis-acting targets of a trans-acting factor on a genome-wide scale."


Show overlaps from virus related biological source
VIS [DVID: 4001411] Location [chr1: 155809244] (GRCh38)
Factor Rank on this VIS Factor Name Overlapped Records Details
1 RUNX1 6 View
2 SPI1 6 View
3 FOXA2 2 View
4 ERG 2 View
5 GABPA 2 View
6 NIPBL 2 View
7 GATA2 1 View
8 JMJD1C 1 View
9 CEBPA 1 View
10 FOXA1 1 View
11 FUS 1 View
12 LMO2 1 View


> Overlapped records detail between VIS [DVID: 4001411] and all transcription factor binding site :


GSMID or ENCODE Cell line Cell type Tissue type Factor
GSM1122314 ME-1 Leukemia Cell None ERG [Search on ENCODE]
GSM726978 SKNO-1 Myeloblast Bone Marrow RUNX1 [Search on ENCODE]
GSM1113428 Kasumi-1 Myeloblast Blood RUNX1 [Search on ENCODE]
GSM1113438 Kasumi-1 Myeloblast Blood RUNX1 [Search on ENCODE]
GSM1164147 DU145 Epithelium Prostate FOXA1 [Search on ENCODE]
GSM1193662 Jurkat T Lymphocyte Blood GABPA [Search on ENCODE]
GSM1193663 Jurkat T Lymphocyte Blood GABPA [Search on ENCODE]
GSM1519151 Ramos B Lymphocyte None NIPBL [Search on ENCODE]
GSM1519152 Ramos B Lymphocyte None NIPBL [Search on ENCODE]
GSM1480736 TSU-1621-MT None None ERG [Search on ENCODE]
GSM1480743 TSU-1621-MT None None FUS [Search on ENCODE]
GSM1480744 TSU-1621-MT None None RUNX1 [Search on ENCODE]
GSM1480745 TSU-1621-MT None None LMO2 [Search on ENCODE]
GSM1557623 TSU-1621-MT None None SPI1 [Search on ENCODE]
GSM1693378 None Myeloid Cell None RUNX1 [Search on ENCODE]
GSM1888547 TF-1 Erythroblast Bone Marrow GATA2 [Search on ENCODE]
GSM1901544 HL-60 Promyeloblast Blood JMJD1C [Search on ENCODE]
GSM1681426 None Macrophage Blood SPI1 [Search on ENCODE]
GSM1681425 None Macrophage Blood SPI1 [Search on ENCODE]
GSM1681423 None Macrophage Blood SPI1 [Search on ENCODE]
GSM2359984 THP-1 Monocyte Blood SPI1 [Search on ENCODE]
GSM2592808 None Macrophage Blood SPI1 [Search on ENCODE]
GSM722423 U937 None Pleura CEBPA [Search on ENCODE]
GSM2326840 SKH1 SKH-1 cells None RUNX1 [Search on ENCODE]
GSM2977503 BJ Fibroblast Skin FOXA2 [Search on ENCODE]
GSM2977502 BJ Fibroblast Skin FOXA2 [Search on ENCODE]
Contents
Description
  • Table Description
This table at top of page is factor ranked by overlap number. The overlap number refers to the overlapping count between VIS selected and one sepecific cistrome factor. The user can click biological source filter with blue button to keep the overlaps which are associated with virus-related diseases based on cistrome sample's biological source.
  • Overlap
An overlap means a match between VIS and 1 of 3 Cistrome data (histone modification, transcription factor binding site and chromatin accessibility), more specifically, this match includes at least 1 overlap between this VIS and 1 Cistrome factor-related sample from 1 of 3 Cistrome factor data. So one VIS may have several overlaps with multiple Cistrome factor-related samples, the associated factor and overlap amount of samples could indicate that the virus integration site is a potentially functional DNA element.