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HIV VIS-Cistrome Factor Overlapped Record Details

This pages show details of Cistrome factor-ralated samples which overlapped this VIS.
The cistrome refers to "the set of cis-acting targets of a trans-acting factor on a genome-wide scale."


Show overlaps from virus related biological source
VIS [DVID: 4000452] Location [chr1: 155695170] (GRCh38)
Factor Rank on this VIS Factor Name Overlapped Records Details
1 H3K4me3 148 View
2 H3K27ac 41 View
3 H3K4me1 38 View
4 H3K4me2 14 View
5 H3K9ac 8 View
6 H3K36me3 6 View
7 H3 1 View
8 H3K9me3 1 View


> Overlapped records detail between VIS [DVID: 4000452] and histone modification [H3K4me1]:


GSMID or ENCODE Cell line Cell type Tissue type Factor
GSM646463 NHEK Keratinocyte Skin H3K4me1 [Search on ENCODE]
GSM670045 None Adipocyte Adipose H3K4me1 [Search on ENCODE]
GSM1234088 GM19238 Lymphoblastoid Blood H3K4me1 [Search on ENCODE]
GSM1234089 GM19238 Lymphoblastoid Blood H3K4me1 [Search on ENCODE]
GSM1234090 GM19238 Lymphoblastoid Blood H3K4me1 [Search on ENCODE]
GSM1234110 GM19239 Lymphoblastoid Blood H3K4me1 [Search on ENCODE]
GSM1234111 GM19239 Lymphoblastoid Blood H3K4me1 [Search on ENCODE]
GSM1234112 GM19239 Lymphoblastoid Blood H3K4me1 [Search on ENCODE]
GSM1234132 GM19240 Lymphoblastoid Blood H3K4me1 [Search on ENCODE]
GSM1234133 GM19240 Lymphoblastoid Blood H3K4me1 [Search on ENCODE]
GSM1234134 GM19240 Lymphoblastoid Blood H3K4me1 [Search on ENCODE]
GSM1234153 GM2255 Lymphoblastoid Blood H3K4me1 [Search on ENCODE]
GSM1234171 GM2588 Lymphoblastoid Blood H3K4me1 [Search on ENCODE]
GSM1234172 GM2588 Lymphoblastoid Blood H3K4me1 [Search on ENCODE]
GSM1234189 GM2610 Lymphoblastoid Blood H3K4me1 [Search on ENCODE]
GSM1234190 GM2610 Lymphoblastoid Blood H3K4me1 [Search on ENCODE]
GSM1234207 GM2630 Lymphoblastoid Blood H3K4me1 [Search on ENCODE]
GSM733698 NHEK Keratinocyte Skin H3K4me1 [Search on ENCODE]
GSM788084 None Monocyte Blood H3K4me1 [Search on ENCODE]
GSM1277988 Raji B Lymphocyte Blood H3K4me1 [Search on ENCODE]
GSM1435516 GM19239 Lymphoblastoid Blood H3K4me1 [Search on ENCODE]
GSM1550796 GM19140 Lymphoblastoid None H3K4me1 [Search on ENCODE]
GSM1550797 GM19092 Lymphoblastoid None H3K4me1 [Search on ENCODE]
GSM1550801 GM18859 Lymphoblastoid None H3K4me1 [Search on ENCODE]
GSM1550813 GM18855 Lymphoblastoid None H3K4me1 [Search on ENCODE]
GSM1550828 GM19203 Lymphoblastoid None H3K4me1 [Search on ENCODE]
GSM1550868 GM19131 Lymphoblastoid None H3K4me1 [Search on ENCODE]
GSM1550885 GM19119 Lymphoblastoid None H3K4me1 [Search on ENCODE]
GSM1550887 GM18502 Lymphoblastoid None H3K4me1 [Search on ENCODE]
GSM1550904 GM19137 Lymphoblastoid None H3K4me1 [Search on ENCODE]
GSM1550912 GM18502 Lymphoblastoid None H3K4me1 [Search on ENCODE]
GSM1550920 GM19114 Lymphoblastoid None H3K4me1 [Search on ENCODE]
GSM1550962 GM18909 Lymphoblastoid None H3K4me1 [Search on ENCODE]
GSM1550971 GM19116 Lymphoblastoid None H3K4me1 [Search on ENCODE]
GSM1550974 GM19152 Lymphoblastoid None H3K4me1 [Search on ENCODE]
GSM1551012 GM19143 Lymphoblastoid None H3K4me1 [Search on ENCODE]
GSM772757 None Adipocyte Adipose H3K4me1 [Search on ENCODE]
GSM2357600 None Ewing sacroma None H3K4me1 [Search on ENCODE]
Contents
Description
  • Table Description
This table at top of page is factor ranked by overlap number. The overlap number refers to the overlapping count between VIS selected and one sepecific cistrome factor. The user can click biological source filter with blue button to keep the overlaps which are associated with virus-related diseases based on cistrome sample's biological source.
  • Overlap
An overlap means a match between VIS and 1 of 3 Cistrome data (histone modification, transcription factor binding site and chromatin accessibility), more specifically, this match includes at least 1 overlap between this VIS and 1 Cistrome factor-related sample from 1 of 3 Cistrome factor data. So one VIS may have several overlaps with multiple Cistrome factor-related samples, the associated factor and overlap amount of samples could indicate that the virus integration site is a potentially functional DNA element.