HIV VIS-Cistrome Factor Overlapped Record Details

This pages show details of Cistrome factor-ralated samples which overlapped this VIS.
The cistrome refers to "the set of cis-acting targets of a trans-acting factor on a genome-wide scale."


Show overlaps from virus related biological source
VIS [DVID: 4000196] Location [chr1: 117535027] (GRCh38)
Factor Rank on this VIS Factor Name Overlapped Records Details
1 CTCF 249 View
2 STAG1 38 View
3 RAD21 13 View
4 SMC1A 8 View
5 JUND 7 View
6 MAFK 7 View
7 RELA 5 View
8 SMC3 5 View
9 EBF1 4 View
10 GATA3 3 View
11 TEAD1 3 View
12 SRF 3 View
13 EBNA3C 2 View
14 GATA2 2 View
15 TEAD2 2 View
16 FLI1 2 View
17 MAFG 2 View
18 TRIM22 2 View
19 EP300 2 View
20 ZSCAN29 2 View
21 MAFF 2 View
22 FOSL1 2 View
23 JUN 2 View
24 HDAC1 2 View
25 CBX3 2 View
26 JUNB 2 View
27 TEAD4 2 View
28 C11orf30 2 View
29 BACH2 2 View
30 BRD4 2 View
31 ZNF654 2 View
32 NFKB2 2 View
33 MEF2A 1 View
34 VDR 1 View
35 SMARCA4 1 View
36 SMARCB1 1 View
37 IRF4 1 View
38 DNMT3A 1 View
39 CUX1 1 View
40 BCL3 1 View
41 RBPJ 1 View
42 DPF2 1 View
43 RUNX3 1 View
44 CHAMP1 1 View
45 STAT1 1 View
46 FOXM1 1 View
47 NBN 1 View
48 FOS 1 View
49 CREB1 1 View
50 TAL1 1 View
51 CBFB 1 View
52 TBL1XR1 1 View
53 STAT5A 1 View
54 ZNF382 1 View
55 TERC 1 View
56 BCL11A 1 View
57 IKZF1 1 View
58 SUMO1 1 View
59 POU2F2 1 View
60 PBX2 1 View
61 SMARCA5 1 View
62 ARID3A 1 View
63 MTA2 1 View
64 IRF1 1 View
65 NFKB1 1 View
66 BATF 1 View
67 ZNF692 1 View
68 BCLAF1 1 View
69 NFATC1 1 View
70 GLIS1 1 View
71 NFIC 1 View
72 CEBPA 1 View
73 BATF3 1 View
74 ATF2 1 View
75 FOXK2 1 View
76 EBF3 1 View
77 PAX5 1 View
78 CDK12 1 View
79 MLLT1 1 View


> Overlapped records detail between VIS [DVID: 4000196] and transcription factor binding site [TERC]:


GSMID or ENCODE Cell line Cell type Tissue type Factor
GSM820438 HeLa Epithelium Cervix TERC [Search on ENCODE]
Contents
Description
  • Table Description
This table at top of page is factor ranked by overlap number. The overlap number refers to the overlapping count between VIS selected and one sepecific cistrome factor. The user can click biological source filter with blue button to keep the overlaps which are associated with virus-related diseases based on cistrome sample's biological source.
  • Overlap
An overlap means a match between VIS and 1 of 3 Cistrome data (histone modification, transcription factor binding site and chromatin accessibility), more specifically, this match includes at least 1 overlap between this VIS and 1 Cistrome factor-related sample from 1 of 3 Cistrome factor data. So one VIS may have several overlaps with multiple Cistrome factor-related samples, the associated factor and overlap amount of samples could indicate that the virus integration site is a potentially functional DNA element.