HIV VIS-Cistrome Factor Overlapped Record Details

This pages show details of Cistrome factor-ralated samples which overlapped this VIS.
The cistrome refers to "the set of cis-acting targets of a trans-acting factor on a genome-wide scale."


Show overlaps from virus related biological source
VIS [DVID: 4000196] Location [chr1: 117535027] (GRCh38)
Factor Rank on this VIS Factor Name Overlapped Records Details
1 CTCF 249 View
2 STAG1 38 View
3 RAD21 13 View
4 SMC1A 8 View
5 MAFK 7 View
6 JUND 7 View
7 SMC3 5 View
8 RELA 5 View
9 EBF1 4 View
10 GATA3 3 View
11 TEAD1 3 View
12 SRF 3 View
13 EP300 2 View
14 ZSCAN29 2 View
15 MAFF 2 View
16 FOSL1 2 View
17 JUN 2 View
18 HDAC1 2 View
19 CBX3 2 View
20 JUNB 2 View
21 TEAD4 2 View
22 C11orf30 2 View
23 BACH2 2 View
24 BRD4 2 View
25 ZNF654 2 View
26 NFKB2 2 View
27 EBNA3C 2 View
28 GATA2 2 View
29 TEAD2 2 View
30 FLI1 2 View
31 MAFG 2 View
32 TRIM22 2 View
33 FOS 1 View
34 CREB1 1 View
35 TAL1 1 View
36 CBFB 1 View
37 TBL1XR1 1 View
38 STAT5A 1 View
39 ZNF382 1 View
40 TERC 1 View
41 BCL11A 1 View
42 IKZF1 1 View
43 SUMO1 1 View
44 POU2F2 1 View
45 PBX2 1 View
46 SMARCA5 1 View
47 ARID3A 1 View
48 MTA2 1 View
49 IRF1 1 View
50 NFKB1 1 View
51 BATF 1 View
52 ZNF692 1 View
53 BCLAF1 1 View
54 NFATC1 1 View
55 GLIS1 1 View
56 NFIC 1 View
57 CEBPA 1 View
58 BATF3 1 View
59 ATF2 1 View
60 FOXK2 1 View
61 EBF3 1 View
62 PAX5 1 View
63 CDK12 1 View
64 MLLT1 1 View
65 MEF2A 1 View
66 VDR 1 View
67 SMARCA4 1 View
68 SMARCB1 1 View
69 IRF4 1 View
70 DNMT3A 1 View
71 CUX1 1 View
72 BCL3 1 View
73 RBPJ 1 View
74 DPF2 1 View
75 RUNX3 1 View
76 CHAMP1 1 View
77 STAT1 1 View
78 FOXM1 1 View
79 NBN 1 View


> Overlapped records detail between VIS [DVID: 4000196] and transcription factor binding site [RUNX3]:


GSMID or ENCODE Cell line Cell type Tissue type Factor
GSM1010893 GM12878 B Lymphocyte Blood RUNX3 [Search on ENCODE]
Contents
Description
  • Table Description
This table at top of page is factor ranked by overlap number. The overlap number refers to the overlapping count between VIS selected and one sepecific cistrome factor. The user can click biological source filter with blue button to keep the overlaps which are associated with virus-related diseases based on cistrome sample's biological source.
  • Overlap
An overlap means a match between VIS and 1 of 3 Cistrome data (histone modification, transcription factor binding site and chromatin accessibility), more specifically, this match includes at least 1 overlap between this VIS and 1 Cistrome factor-related sample from 1 of 3 Cistrome factor data. So one VIS may have several overlaps with multiple Cistrome factor-related samples, the associated factor and overlap amount of samples could indicate that the virus integration site is a potentially functional DNA element.