HIV VIS-Cistrome Factor Overlapped Record Details

This pages show details of Cistrome factor-ralated samples which overlapped this VIS.
The cistrome refers to "the set of cis-acting targets of a trans-acting factor on a genome-wide scale."


Show overlaps from virus related biological source
VIS [DVID: 4000196] Location [chr1: 117535027] (GRCh38)
Factor Rank on this VIS Factor Name Overlapped Records Details
1 CTCF 249 View
2 STAG1 38 View
3 RAD21 13 View
4 SMC1A 8 View
5 MAFK 7 View
6 JUND 7 View
7 RELA 5 View
8 SMC3 5 View
9 EBF1 4 View
10 GATA3 3 View
11 TEAD1 3 View
12 SRF 3 View
13 FLI1 2 View
14 MAFG 2 View
15 TRIM22 2 View
16 EP300 2 View
17 ZSCAN29 2 View
18 MAFF 2 View
19 FOSL1 2 View
20 JUN 2 View
21 HDAC1 2 View
22 CBX3 2 View
23 JUNB 2 View
24 TEAD4 2 View
25 C11orf30 2 View
26 BACH2 2 View
27 BRD4 2 View
28 ZNF654 2 View
29 NFKB2 2 View
30 EBNA3C 2 View
31 GATA2 2 View
32 TEAD2 2 View
33 CUX1 1 View
34 BCL3 1 View
35 RBPJ 1 View
36 DPF2 1 View
37 RUNX3 1 View
38 CHAMP1 1 View
39 STAT1 1 View
40 FOXM1 1 View
41 NBN 1 View
42 FOS 1 View
43 CREB1 1 View
44 TAL1 1 View
45 CBFB 1 View
46 TBL1XR1 1 View
47 STAT5A 1 View
48 ZNF382 1 View
49 TERC 1 View
50 BCL11A 1 View
51 IKZF1 1 View
52 SUMO1 1 View
53 POU2F2 1 View
54 PBX2 1 View
55 SMARCA5 1 View
56 ARID3A 1 View
57 MTA2 1 View
58 IRF1 1 View
59 NFKB1 1 View
60 BATF 1 View
61 ZNF692 1 View
62 BCLAF1 1 View
63 NFATC1 1 View
64 GLIS1 1 View
65 NFIC 1 View
66 CEBPA 1 View
67 BATF3 1 View
68 ATF2 1 View
69 FOXK2 1 View
70 EBF3 1 View
71 PAX5 1 View
72 CDK12 1 View
73 MLLT1 1 View
74 MEF2A 1 View
75 VDR 1 View
76 SMARCA4 1 View
77 SMARCB1 1 View
78 IRF4 1 View
79 DNMT3A 1 View


> Overlapped records detail between VIS [DVID: 4000196] and transcription factor binding site [GATA2]:


GSMID or ENCODE Cell line Cell type Tissue type Factor
GSM1888548 TF-1 Erythroblast Bone Marrow GATA2 [Search on ENCODE]
GSM1888549 TF-1 Erythroblast Bone Marrow GATA2 [Search on ENCODE]
Contents
Description
  • Table Description
This table at top of page is factor ranked by overlap number. The overlap number refers to the overlapping count between VIS selected and one sepecific cistrome factor. The user can click biological source filter with blue button to keep the overlaps which are associated with virus-related diseases based on cistrome sample's biological source.
  • Overlap
An overlap means a match between VIS and 1 of 3 Cistrome data (histone modification, transcription factor binding site and chromatin accessibility), more specifically, this match includes at least 1 overlap between this VIS and 1 Cistrome factor-related sample from 1 of 3 Cistrome factor data. So one VIS may have several overlaps with multiple Cistrome factor-related samples, the associated factor and overlap amount of samples could indicate that the virus integration site is a potentially functional DNA element.