HIV VIS-Cistrome Factor Overlapped Record Details

This pages show details of Cistrome factor-ralated samples which overlapped this VIS.
The cistrome refers to "the set of cis-acting targets of a trans-acting factor on a genome-wide scale."


Show overlaps from virus related biological source
VIS [DVID: 4000196] Location [chr1: 117535027] (GRCh38)
Factor Rank on this VIS Factor Name Overlapped Records Details
1 CTCF 249 View
2 STAG1 38 View
3 RAD21 13 View
4 SMC1A 8 View
5 JUND 7 View
6 MAFK 7 View
7 RELA 5 View
8 SMC3 5 View
9 EBF1 4 View
10 SRF 3 View
11 GATA3 3 View
12 TEAD1 3 View
13 NFKB2 2 View
14 EBNA3C 2 View
15 TEAD2 2 View
16 GATA2 2 View
17 FLI1 2 View
18 MAFG 2 View
19 TRIM22 2 View
20 EP300 2 View
21 ZSCAN29 2 View
22 FOSL1 2 View
23 MAFF 2 View
24 JUN 2 View
25 JUNB 2 View
26 HDAC1 2 View
27 CBX3 2 View
28 C11orf30 2 View
29 TEAD4 2 View
30 BACH2 2 View
31 BRD4 2 View
32 ZNF654 2 View
33 FOXK2 1 View
34 EBF3 1 View
35 ATF2 1 View
36 MLLT1 1 View
37 PAX5 1 View
38 CDK12 1 View
39 SMARCA4 1 View
40 SMARCB1 1 View
41 MEF2A 1 View
42 VDR 1 View
43 DNMT3A 1 View
44 IRF4 1 View
45 DPF2 1 View
46 CUX1 1 View
47 BCL3 1 View
48 RBPJ 1 View
49 RUNX3 1 View
50 CHAMP1 1 View
51 STAT1 1 View
52 FOXM1 1 View
53 NBN 1 View
54 CBFB 1 View
55 FOS 1 View
56 CREB1 1 View
57 TAL1 1 View
58 ZNF382 1 View
59 TBL1XR1 1 View
60 STAT5A 1 View
61 IKZF1 1 View
62 TERC 1 View
63 BCL11A 1 View
64 PBX2 1 View
65 SMARCA5 1 View
66 SUMO1 1 View
67 POU2F2 1 View
68 MTA2 1 View
69 ARID3A 1 View
70 NFKB1 1 View
71 IRF1 1 View
72 ZNF692 1 View
73 BCLAF1 1 View
74 BATF 1 View
75 GLIS1 1 View
76 NFATC1 1 View
77 BATF3 1 View
78 NFIC 1 View
79 CEBPA 1 View


> Overlapped records detail between VIS [DVID: 4000196] and transcription factor binding site [EP300]:


GSMID or ENCODE Cell line Cell type Tissue type Factor
GSM935562 GM12878 B Lymphocyte Blood EP300 [Search on ENCODE]
GSM1333964 GM12878 B Lymphocyte Blood EP300 [Search on ENCODE]
Contents
Description
  • Table Description
This table at top of page is factor ranked by overlap number. The overlap number refers to the overlapping count between VIS selected and one sepecific cistrome factor. The user can click biological source filter with blue button to keep the overlaps which are associated with virus-related diseases based on cistrome sample's biological source.
  • Overlap
An overlap means a match between VIS and 1 of 3 Cistrome data (histone modification, transcription factor binding site and chromatin accessibility), more specifically, this match includes at least 1 overlap between this VIS and 1 Cistrome factor-related sample from 1 of 3 Cistrome factor data. So one VIS may have several overlaps with multiple Cistrome factor-related samples, the associated factor and overlap amount of samples could indicate that the virus integration site is a potentially functional DNA element.