HIV VIS-Cistrome Factor Overlapped Record Details

This pages show details of Cistrome factor-ralated samples which overlapped this VIS.
The cistrome refers to "the set of cis-acting targets of a trans-acting factor on a genome-wide scale."


Show overlaps from virus related biological source
VIS [DVID: 4000196] Location [chr1: 117535027] (GRCh38)
Factor Rank on this VIS Factor Name Overlapped Records Details
1 CTCF 249 View
2 STAG1 38 View
3 RAD21 13 View
4 SMC1A 8 View
5 MAFK 7 View
6 JUND 7 View
7 SMC3 5 View
8 RELA 5 View
9 EBF1 4 View
10 GATA3 3 View
11 TEAD1 3 View
12 SRF 3 View
13 JUN 2 View
14 HDAC1 2 View
15 CBX3 2 View
16 JUNB 2 View
17 TEAD4 2 View
18 C11orf30 2 View
19 BACH2 2 View
20 BRD4 2 View
21 ZNF654 2 View
22 NFKB2 2 View
23 EBNA3C 2 View
24 GATA2 2 View
25 TEAD2 2 View
26 FLI1 2 View
27 MAFG 2 View
28 TRIM22 2 View
29 EP300 2 View
30 ZSCAN29 2 View
31 MAFF 2 View
32 FOSL1 2 View
33 SUMO1 1 View
34 POU2F2 1 View
35 PBX2 1 View
36 SMARCA5 1 View
37 ARID3A 1 View
38 MTA2 1 View
39 IRF1 1 View
40 NFKB1 1 View
41 BATF 1 View
42 ZNF692 1 View
43 BCLAF1 1 View
44 NFATC1 1 View
45 GLIS1 1 View
46 NFIC 1 View
47 CEBPA 1 View
48 BATF3 1 View
49 ATF2 1 View
50 FOXK2 1 View
51 EBF3 1 View
52 PAX5 1 View
53 CDK12 1 View
54 MLLT1 1 View
55 MEF2A 1 View
56 VDR 1 View
57 SMARCA4 1 View
58 SMARCB1 1 View
59 IRF4 1 View
60 DNMT3A 1 View
61 CUX1 1 View
62 BCL3 1 View
63 RBPJ 1 View
64 DPF2 1 View
65 RUNX3 1 View
66 CHAMP1 1 View
67 STAT1 1 View
68 FOXM1 1 View
69 NBN 1 View
70 FOS 1 View
71 CREB1 1 View
72 TAL1 1 View
73 CBFB 1 View
74 TBL1XR1 1 View
75 STAT5A 1 View
76 ZNF382 1 View
77 TERC 1 View
78 BCL11A 1 View
79 IKZF1 1 View


> Overlapped records detail between VIS [DVID: 4000196] and transcription factor binding site [EBF1]:


GSMID or ENCODE Cell line Cell type Tissue type Factor
GSM935375 GM12878 B Lymphocyte Blood EBF1 [Search on ENCODE]
GSM803386 GM12878 B Lymphocyte Blood EBF1 [Search on ENCODE]
GSM1958038 MutuI B Lymphocyte None EBF1 [Search on ENCODE]
GSM1958039 LCL Lymphoblastoid Blood EBF1 [Search on ENCODE]
Contents
Description
  • Table Description
This table at top of page is factor ranked by overlap number. The overlap number refers to the overlapping count between VIS selected and one sepecific cistrome factor. The user can click biological source filter with blue button to keep the overlaps which are associated with virus-related diseases based on cistrome sample's biological source.
  • Overlap
An overlap means a match between VIS and 1 of 3 Cistrome data (histone modification, transcription factor binding site and chromatin accessibility), more specifically, this match includes at least 1 overlap between this VIS and 1 Cistrome factor-related sample from 1 of 3 Cistrome factor data. So one VIS may have several overlaps with multiple Cistrome factor-related samples, the associated factor and overlap amount of samples could indicate that the virus integration site is a potentially functional DNA element.