HIV VIS-Cistrome Factor Overlapped Record Details

This pages show details of Cistrome factor-ralated samples which overlapped this VIS.
The cistrome refers to "the set of cis-acting targets of a trans-acting factor on a genome-wide scale."


Show overlaps from virus related biological source
VIS [DVID: 4000196] Location [chr1: 117535027] (GRCh38)
Factor Rank on this VIS Factor Name Overlapped Records Details
1 CTCF 249 View
2 STAG1 38 View
3 RAD21 13 View
4 SMC1A 8 View
5 MAFK 7 View
6 JUND 7 View
7 RELA 5 View
8 SMC3 5 View
9 EBF1 4 View
10 GATA3 3 View
11 TEAD1 3 View
12 SRF 3 View
13 MAFG 2 View
14 TRIM22 2 View
15 EP300 2 View
16 ZSCAN29 2 View
17 MAFF 2 View
18 FOSL1 2 View
19 JUN 2 View
20 HDAC1 2 View
21 CBX3 2 View
22 JUNB 2 View
23 TEAD4 2 View
24 C11orf30 2 View
25 BACH2 2 View
26 BRD4 2 View
27 ZNF654 2 View
28 NFKB2 2 View
29 EBNA3C 2 View
30 GATA2 2 View
31 TEAD2 2 View
32 FLI1 2 View
33 RUNX3 1 View
34 CHAMP1 1 View
35 STAT1 1 View
36 FOXM1 1 View
37 NBN 1 View
38 FOS 1 View
39 CREB1 1 View
40 TAL1 1 View
41 CBFB 1 View
42 TBL1XR1 1 View
43 STAT5A 1 View
44 ZNF382 1 View
45 TERC 1 View
46 BCL11A 1 View
47 IKZF1 1 View
48 SUMO1 1 View
49 POU2F2 1 View
50 PBX2 1 View
51 SMARCA5 1 View
52 ARID3A 1 View
53 MTA2 1 View
54 IRF1 1 View
55 NFKB1 1 View
56 BATF 1 View
57 ZNF692 1 View
58 BCLAF1 1 View
59 NFATC1 1 View
60 GLIS1 1 View
61 NFIC 1 View
62 CEBPA 1 View
63 BATF3 1 View
64 ATF2 1 View
65 FOXK2 1 View
66 EBF3 1 View
67 PAX5 1 View
68 CDK12 1 View
69 MLLT1 1 View
70 MEF2A 1 View
71 VDR 1 View
72 SMARCA4 1 View
73 SMARCB1 1 View
74 IRF4 1 View
75 DNMT3A 1 View
76 CUX1 1 View
77 BCL3 1 View
78 RBPJ 1 View
79 DPF2 1 View


> Overlapped records detail between VIS [DVID: 4000196] and transcription factor binding site [DPF2]:


GSMID or ENCODE Cell line Cell type Tissue type Factor
ENCSR715CCR_2 K562 Erythroblast Bone Marrow DPF2 [Search on ENCODE]
Contents
Description
  • Table Description
This table at top of page is factor ranked by overlap number. The overlap number refers to the overlapping count between VIS selected and one sepecific cistrome factor. The user can click biological source filter with blue button to keep the overlaps which are associated with virus-related diseases based on cistrome sample's biological source.
  • Overlap
An overlap means a match between VIS and 1 of 3 Cistrome data (histone modification, transcription factor binding site and chromatin accessibility), more specifically, this match includes at least 1 overlap between this VIS and 1 Cistrome factor-related sample from 1 of 3 Cistrome factor data. So one VIS may have several overlaps with multiple Cistrome factor-related samples, the associated factor and overlap amount of samples could indicate that the virus integration site is a potentially functional DNA element.