HIV VIS-Cistrome Factor Overlapped Record Details

This pages show details of Cistrome factor-ralated samples which overlapped this VIS.
The cistrome refers to "the set of cis-acting targets of a trans-acting factor on a genome-wide scale."

Show overlaps from virus related biological source

Factor Rank on this VIS	Factor Name	Overlapped Records	Details
1	H3K4me1	33	View
2	H3K27ac	18	View
3	H3K4me2	18	View
4	H3K4me3	12	View
5	H3	5	View
6	H3K9ac	4	View
7	H3K18ac	1	View
8	H3K9me3	1	View

> Overlapped records detail between VIS [DVID: 4001053] and histone modification [H3K4me2]:

GSMID or ENCODE	Cell line	Cell type	Tissue type	Factor
GSM594607	MCF-7	Epithelium	Breast	H3K4me2 [Search on ENCODE]
GSM646465	NHEK	Keratinocyte	Skin	H3K4me2 [Search on ENCODE]
GSM646464	NHEK	Keratinocyte	Skin	H3K4me2 [Search on ENCODE]
GSM646344	H1	Embryonic Stem Cell	Embryo	H3K4me2 [Search on ENCODE]
GSM646383	None	Epithelium	Mammary Gland	H3K4me2 [Search on ENCODE]
GSM733670	H1	Embryonic Stem Cell	Embryo	H3K4me2 [Search on ENCODE]
GSM733654	None	Epithelium	Mammary Gland	H3K4me2 [Search on ENCODE]
GSM733686	NHEK	Keratinocyte	Skin	H3K4me2 [Search on ENCODE]
GSM1122654	MCF-7	Epithelium	Breast	H3K4me2 [Search on ENCODE]
GSM1122665	SUM159PT	Epithelium	Mammary Gland	H3K4me2 [Search on ENCODE]
GSM1892632	None	None	Snap-frozen tissue	H3K4me2 [Search on ENCODE]
GSM2175577	HCT-116	Human colorectal tumor	None	H3K4me2 [Search on ENCODE]
GSM1617371	None	None	Snap-frozen tissue	H3K4me2 [Search on ENCODE]
GSM1846179	None	Granulocyte	Blood	H3K4me2 [Search on ENCODE]
GSM2476260	MCF-7	None	Breast	H3K4me2 [Search on ENCODE]
GSM2476259	MCF-7	None	Breast	H3K4me2 [Search on ENCODE]
GSM2476258	MCF-7	None	Breast	H3K4me2 [Search on ENCODE]
GSM602261	H1	Embryonic Stem Cell	Embryo	H3K4me2 [Search on ENCODE]

Contents
Description

Table Description

This table at top of page is factor ranked by overlap number. The overlap number refers to the overlapping count between VIS selected and one sepecific cistrome factor. The user can click biological source filter with blue button to keep the overlaps which are associated with virus-related diseases based on cistrome sample's biological source.

Overlap

An overlap means a match between VIS and 1 of 3 Cistrome data (histone modification, transcription factor binding site and chromatin accessibility), more specifically, this match includes at least 1 overlap between this VIS and 1 Cistrome factor-related sample from 1 of 3 Cistrome factor data. So one VIS may have several overlaps with multiple Cistrome factor-related samples, the associated factor and overlap amount of samples could indicate that the virus integration site is a potentially functional DNA element.