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HIV VIS-Cistrome Factor Overlapped Record Details

This pages show details of Cistrome factor-ralated samples which overlapped this VIS.
The cistrome refers to "the set of cis-acting targets of a trans-acting factor on a genome-wide scale."


Show overlaps from virus related biological source
VIS [DVID: 4001053] Location [chr1: 116553486] (GRCh38)
Factor Rank on this VIS Factor Name Overlapped Records Details
1 H3K4me1 33 View
2 H3K4me2 18 View
3 H3K27ac 18 View
4 H3K4me3 12 View
5 H3 5 View
6 H3K9ac 4 View
7 H3K18ac 1 View
8 H3K9me3 1 View


> Overlapped records detail between VIS [DVID: 4001053] and all histone modification :


GSMID or ENCODE Cell line Cell type Tissue type Factor
GSM537668 hES I3 Embryonic Stem Cell Embryo H3K4me1 [Search on ENCODE]
GSM669891 HUES6 Embryonic Stem Cell Embryo H3K4me1 [Search on ENCODE]
GSM669885 HUES6 Embryonic Stem Cell Embryo H3K4me1 [Search on ENCODE]
GSM669966 HUES64 Embryonic Stem Cell Embryo H3K4me1 [Search on ENCODE]
GSM706073 iPS DF 6.9 iPSC None H3K4me1 [Search on ENCODE]
GSM594607 MCF-7 Epithelium Breast H3K4me2 [Search on ENCODE]
GSM958155 None Keratinocyte Foreskin H3K4me3 [Search on ENCODE]
GSM910573 None None Esophagus H3K4me1 [Search on ENCODE]
GSM646468 NHEK Keratinocyte Skin H3K9ac [Search on ENCODE]
GSM646465 NHEK Keratinocyte Skin H3K4me2 [Search on ENCODE]
GSM646456 NHEK Keratinocyte Skin H3K27ac [Search on ENCODE]
GSM646464 NHEK Keratinocyte Skin H3K4me2 [Search on ENCODE]
GSM646467 NHEK Keratinocyte Skin H3K4me3 [Search on ENCODE]
GSM646344 H1 Embryonic Stem Cell Embryo H3K4me2 [Search on ENCODE]
GSM646383 None Epithelium Mammary Gland H3K4me2 [Search on ENCODE]
GSM646384 None Epithelium Mammary Gland H3K4me3 [Search on ENCODE]
GSM950850 UKE-1 Leukemia Cell None H3K4me3 [Search on ENCODE]
GSM950844 UKE-1 Leukemia Cell None H3K4me3 [Search on ENCODE]
GSM941736 None Keratinocyte Foreskin H3K4me1 [Search on ENCODE]
GSM941735 None Keratinocyte Foreskin H3K4me3 [Search on ENCODE]
GSM1127080 UCSF-4* Embryonic Stem Cell Embryo H3K4me1 [Search on ENCODE]
GSM1272755 BG01 Embryonic Stem Cell Embryo H3K4me1 [Search on ENCODE]
GSM995358 None Monocyte Blood H3K4me1 [Search on ENCODE]
GSM1056946 None T Lymphocyte Blood H3K4me1 [Search on ENCODE]
GSM733670 H1 Embryonic Stem Cell Embryo H3K4me2 [Search on ENCODE]
GSM733654 None Epithelium Mammary Gland H3K4me2 [Search on ENCODE]
GSM733660 None Epithelium Mammary Gland H3K27ac [Search on ENCODE]
GSM733712 None Epithelium Mammary Gland H3K4me3 [Search on ENCODE]
GSM733698 NHEK Keratinocyte Skin H3K4me1 [Search on ENCODE]
GSM733674 NHEK Keratinocyte Skin H3K27ac [Search on ENCODE]
GSM733686 NHEK Keratinocyte Skin H3K4me2 [Search on ENCODE]
GSM733665 NHEK Keratinocyte Skin H3K9ac [Search on ENCODE]
GSM1122654 MCF-7 Epithelium Breast H3K4me2 [Search on ENCODE]
GSM1122665 SUM159PT Epithelium Mammary Gland H3K4me2 [Search on ENCODE]
GSM1399262 H1 Embryonic Stem Cell Embryo H3K4me1 [Search on ENCODE]
GSM1399263 H1 Embryonic Stem Cell Embryo H3K4me1 [Search on ENCODE]
GSM1519137 None None Tonsil H3 [Search on ENCODE]
GSM1316303 CyT49 Embryonic Stem Cell Embryo H3K4me1 [Search on ENCODE]
GSM1501175 None Neuroepithelial-like stem cell None H3K4me1 [Search on ENCODE]
GSM1565794 None Dendritic Cell None H3K27ac [Search on ENCODE]
GSM1565808 None Dendritic Cell None H3K27ac [Search on ENCODE]
GSM1565812 None Dendritic Cell None H3K4me3 [Search on ENCODE]
GSM1918575 K562 Erythroblast Bone Marrow H3K27ac [Search on ENCODE]
GSM1702515 None None Bone Marrow H3K9ac [Search on ENCODE]
GSM2042878 HT29 None Colon H3K27ac [Search on ENCODE]
GSM2042882 HT29 None Colon H3K27ac [Search on ENCODE]
GSM818023 H1 Embryonic Stem Cell Embryo H3K18ac [Search on ENCODE]
GSM818052 H1 Embryonic Stem Cell Embryo H3K9ac [Search on ENCODE]
GSM772789 hES I3 Embryonic Stem Cell Embryo H3K4me1 [Search on ENCODE]
GSM2572315 None Keratinocyte Foreskin H3K27ac [Search on ENCODE]
GSM2572314 None Keratinocyte Foreskin H3K27ac [Search on ENCODE]
GSM2572313 None Keratinocyte Foreskin H3K27ac [Search on ENCODE]
GSM1892632 None None Snap-frozen tissue H3K4me2 [Search on ENCODE]
GSM1666383 NHEK Keratinocyte Skin H3K4me1 [Search on ENCODE]
GSM1816327 None Hematopoietic stem and progenitor cell None H3K4me1 [Search on ENCODE]
GSM1816323 None None Umbilical Cord H3K4me1 [Search on ENCODE]
GSM1816322 None None Umbilical Cord H3K4me3 [Search on ENCODE]
GSM1832641 ZR-75-30 None None H3K4me1 [Search on ENCODE]
GSM2175577 HCT-116 Human colorectal tumor None H3K4me2 [Search on ENCODE]
GSM1607388 None Stem cell Foreskin H3K4me3 [Search on ENCODE]
GSM2308949 HeLa Epithelium Cervix H3K9me3 [Search on ENCODE]
GSM2067522 MCF-7 None Breast H3K27ac [Search on ENCODE]
GSM2067521 MCF-7 None Breast H3K27ac [Search on ENCODE]
GSM2067519 MCF-7 None Breast H3K4me1 [Search on ENCODE]
GSM2067517 MCF-7 None Breast H3K4me1 [Search on ENCODE]
GSM2442787 None Endothelial Cell Umbilical Vein H3K4me1 [Search on ENCODE]
GSM1617371 None None Snap-frozen tissue H3K4me2 [Search on ENCODE]
GSM2029367 H9 Embryonic Stem Cell Embryo H3K4me1 [Search on ENCODE]
GSM2029352 H9 Embryonic Stem Cell Embryo H3K4me1 [Search on ENCODE]
GSM2058085 V855 None None H3K4me1 [Search on ENCODE]
GSM2035821 NHEK Keratinocyte Skin H3K4me1 [Search on ENCODE]
GSM2035813 NHEK Keratinocyte Skin H3K4me1 [Search on ENCODE]
GSM1846179 None Granulocyte Blood H3K4me2 [Search on ENCODE]
GSM2476260 MCF-7 None Breast H3K4me2 [Search on ENCODE]
GSM2476259 MCF-7 None Breast H3K4me2 [Search on ENCODE]
GSM2476258 MCF-7 None Breast H3K4me2 [Search on ENCODE]
GSM2550263 None Stem cell None H3 [Search on ENCODE]
GSM2816752 None Epithelium None H3K27ac [Search on ENCODE]
GSM2712764 HCT-116 None HCT116 H3K4me1 [Search on ENCODE]
GSM2766560 None Epithelium None H3K4me3 [Search on ENCODE]
GSM2247244 None Keratinocyte None H3K27ac [Search on ENCODE]
GSM773043 None Haematopoietic Progenitor Cell Cord blood H3K4me1 [Search on ENCODE]
GSM2550207 None Stem cell None H3 [Search on ENCODE]
GSM1914982 143B Osteosarcoma cell None H3K4me1 [Search on ENCODE]
GSM2258694 76NF2V None Breast H3K4me3 [Search on ENCODE]
GSM2550221 None Stem cell None H3 [Search on ENCODE]
GSM2060768 PrEC Epithelium Prostate H3K27ac [Search on ENCODE]
GSM2496166 None Keratinocyte None H3K27ac [Search on ENCODE]
GSM2359492 RT112 Epithelium Urinary Bladder H3K27ac [Search on ENCODE]
GSM2550186 None Stem cell None H3 [Search on ENCODE]
GSM434762 H1 Embryonic Stem Cell Embryo H3K4me1 [Search on ENCODE]
GSM602261 H1 Embryonic Stem Cell Embryo H3K4me2 [Search on ENCODE]
Contents
Description
  • Table Description
This table at top of page is factor ranked by overlap number. The overlap number refers to the overlapping count between VIS selected and one sepecific cistrome factor. The user can click biological source filter with blue button to keep the overlaps which are associated with virus-related diseases based on cistrome sample's biological source.
  • Overlap
An overlap means a match between VIS and 1 of 3 Cistrome data (histone modification, transcription factor binding site and chromatin accessibility), more specifically, this match includes at least 1 overlap between this VIS and 1 Cistrome factor-related sample from 1 of 3 Cistrome factor data. So one VIS may have several overlaps with multiple Cistrome factor-related samples, the associated factor and overlap amount of samples could indicate that the virus integration site is a potentially functional DNA element.