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HIV VIS-Cistrome Factor Overlapped Record Details

This pages show details of Cistrome factor-ralated samples which overlapped this VIS.
The cistrome refers to "the set of cis-acting targets of a trans-acting factor on a genome-wide scale."


Location chr1: 113769317-113769318 (GRCh38)
GSMID or ENCODE Cell line Cell type Tissue type Factor
GSM602291 H9 Embryonic Stem Cell Embryo EP300 [Search on ENCODE]
GSM317582 None Haematopoietic Progenitor Cell Bone Marrow H2AZ [Search on ENCODE]
GSM894077 U87 None Brain MAX [Search on ENCODE]
GSM881712 NCCIT None Embryo POU5F1 [Search on ENCODE]
GSM785501 None Macrophage None SPI1 [Search on ENCODE]
GSM785495 None Monocyte None SPI1 [Search on ENCODE]
GSM785493 None Monocyte None H2AZ [Search on ENCODE]
GSM785499 None Macrophage None H2AZ [Search on ENCODE]
GSM1126512 None CD14 cell None H2AZ [Search on ENCODE]
GSM1126511 None CD14 cell None H2AZ [Search on ENCODE]
GSM1126513 None CD14 cell None H2AZ [Search on ENCODE]
GSM1126514 None CD14 cell None H2AZ [Search on ENCODE]
GSM1126515 None CD14 cell None H2AZ [Search on ENCODE]
GSM1057025 None Monocyte Blood IRF1 [Search on ENCODE]
GSM1057026 None Monocyte Blood IRF1 [Search on ENCODE]
GSM1057027 None Monocyte Blood IRF1 [Search on ENCODE]
GSM848788 BE2-C Neuroblast Brain HOXC9 [Search on ENCODE]
GSM1003548 None Monocyte Blood H2AZ [Search on ENCODE]
GSM1003530 NHLF Fibroblast Lung H2AZ [Search on ENCODE]
GSM733766 None Osteoblast Bone H2AZ [Search on ENCODE]
GSM803531 GM12878 B Lymphocyte Blood SPI1 [Search on ENCODE]
GSM803388 GM12878 B Lymphocyte Blood BCL11A [Search on ENCODE]
GSM803398 GM12891 Lymphoblastoid Blood SPI1 [Search on ENCODE]
GSM1010843 HL-60 Promyeloblast Blood SPI1 [Search on ENCODE]
GSM1334005 GM12878 B Lymphocyte Blood SPI1 [Search on ENCODE]
GSM1334006 GM12878 B Lymphocyte Blood SPI1 [Search on ENCODE]
GSM1334007 GM12878 B Lymphocyte Blood SPI1 [Search on ENCODE]
GSM1399258 H1 Embryonic Stem Cell Embryo TRIM28 [Search on ENCODE]
GSM1503826 H1 Embryonic Stem Cell Embryo SSU72 [Search on ENCODE]
GSM1421017 None Monocyte None SPI1 [Search on ENCODE]
GSM1421019 None Monocyte None SPI1 [Search on ENCODE]
GSM1495450 None T Lymphocyte None PSIP1 [Search on ENCODE]
GSM1557623 TSU-1621-MT None None SPI1 [Search on ENCODE]
GSM1579364 None Embryonic Stem Cell None NIPBL [Search on ENCODE]
GSM1579366 None Embryonic Stem Cell None NIPBL [Search on ENCODE]
GSM1703900 None B Lymphocyte None SPI1 [Search on ENCODE]
GSM1782712 K562 Erythroblast Bone Marrow SPI1 [Search on ENCODE]
GSM1841308 RS4 B Lymphocyte None SPI1 [Search on ENCODE]
GSM1816089 None Hematopoietic stem and progenitor cell Fetal Liver SPI1 [Search on ENCODE]
GSM1681426 None Macrophage Blood SPI1 [Search on ENCODE]
GSM1681425 None Macrophage Blood SPI1 [Search on ENCODE]
GSM1681424 None Macrophage Blood SPI1 [Search on ENCODE]
GSM1681423 None Macrophage Blood SPI1 [Search on ENCODE]
GSM2432981 D283 Med None None OTX2 [Search on ENCODE]
GSM2432980 D283 Med None None OTX2 [Search on ENCODE]
GSM2432973 D-341 None None OTX2 [Search on ENCODE]
GSM2432971 D-341 None None OTX2 [Search on ENCODE]
GSM2432969 D-341 None None OTX2 [Search on ENCODE]
GSM2432967 D-341 None None OTX2 [Search on ENCODE]
GSM2432964 D-341 None None OTX2 [Search on ENCODE]
GSM2432962 D-341 None None OTX2 [Search on ENCODE]
GSM2432960 D-341 None None OTX2 [Search on ENCODE]
GSM2432958 D-341 None None OTX2 [Search on ENCODE]
GSM2432951 D-341 None None OTX2 [Search on ENCODE]
GSM2432950 D-341 None None OTX2 [Search on ENCODE]
GSM2432942 D283 Med None None OTX2 [Search on ENCODE]
GSM2359987 THP-1 Monocyte Blood SPI1 [Search on ENCODE]
GSM2359986 THP-1 Monocyte Blood SPI1 [Search on ENCODE]
GSM2359985 THP-1 Monocyte Blood SPI1 [Search on ENCODE]
GSM2359984 THP-1 Monocyte Blood SPI1 [Search on ENCODE]
GSM2359983 THP-1 Monocyte Blood SPI1 [Search on ENCODE]
GSM2359982 THP-1 Monocyte Blood SPI1 [Search on ENCODE]
GSM2592808 None Macrophage Blood SPI1 [Search on ENCODE]
GSM2977504 BJ Fibroblast Skin FOXA2 [Search on ENCODE]
GSM2635692 H1 Embryonic Stem Cell Embryo SMAD2 [Search on ENCODE]
GSM2977503 BJ Fibroblast Skin FOXA2 [Search on ENCODE]
Contents
Description
  • Overlapped Record Details
An overlapped record means a match between VIS and 1 of 3 Cistrome factor (histone modification, transcription factor binding site and chromatin accessibility), more specifically, this match includes at least 1 overlap between this VIS and 1 Cistrome factor-related sample from 1 of 3 Cistrome factor data. So one VIS may have several overlaps with multiple Cistrome factor-related samples, the associated factor and overlap amount of samples could indicate that the virus integration site is a potentially functional DNA element.