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HIV VIS-Cistrome Factor Overlapped Record Details

This pages show details of Cistrome factor-ralated samples which overlapped this VIS.
The cistrome refers to "the set of cis-acting targets of a trans-acting factor on a genome-wide scale."


Location chr1: 39266417-39266418 (GRCh38)
GSMID or ENCODE Cell line Cell type Tissue type Factor
GSM665800 iPS DF 19.7 iPSC None DNase [Search on ENCODE]
GSM665802 iPS DF 6.9 iPSC None DNase [Search on ENCODE]
GSM701537 None T Lymphocyte Fetal Thymus DNase [Search on ENCODE]
GSM701531 None Epithelium Fetal Large Intestine DNase [Search on ENCODE]
GSM701511 None Cortex Fetal Kidney DNase [Search on ENCODE]
GSM665834 None Epithelium Kidney DNase [Search on ENCODE]
GSM665818 None Epithelium Large Intestine DNase [Search on ENCODE]
GSM665798 None Haematopoietic Progenitor Cell Blood DNase [Search on ENCODE]
GSM595917 None Haematopoietic Progenitor Cell Blood DNase [Search on ENCODE]
GSM530664 None Haematopoietic Progenitor Cell Blood DNase [Search on ENCODE]
GSM530663 None Haematopoietic Progenitor Cell Blood DNase [Search on ENCODE]
GSM530661 None Epithelium Fetal Heart DNase [Search on ENCODE]
GSM530660 None Haematopoietic Progenitor Cell Blood DNase [Search on ENCODE]
GSM530659 None Haematopoietic Progenitor Cell Blood DNase [Search on ENCODE]
GSM530658 None Haematopoietic Progenitor Cell Blood DNase [Search on ENCODE]
GSM530657 None Haematopoietic Progenitor Cell Blood DNase [Search on ENCODE]
GSM530655 None Cortex Fetal Kidney DNase [Search on ENCODE]
GSM530652 None Haematopoietic Progenitor Cell Blood DNase [Search on ENCODE]
GSM493387 None Haematopoietic Progenitor Cell Blood DNase [Search on ENCODE]
GSM623516 K562 Erythroblast Bone Marrow DNase [Search on ENCODE]
GSM1024610 None Melanocyte Foreskin DNase [Search on ENCODE]
GSM817215 H1 Embryonic Stem Cell Embryo DNase [Search on ENCODE]
GSM1059529 None None Cord blood DNase [Search on ENCODE]
GSM646563 H7 Embryonic Stem Cell Embryo DNase [Search on ENCODE]
GSM909311 iPS DF 19.11 iPSC Foreskin DNase [Search on ENCODE]
GSM878616 H1 Embryonic Stem Cell Embryo DNase [Search on ENCODE]
GSM1027342 None Epithelium Fetal Kidney DNase [Search on ENCODE]
GSM1027346 None Epithelium Fetal Kidney Right DNase [Search on ENCODE]
GSM1027338 None Epithelium Fetal Kidney Left DNase [Search on ENCODE]
GSM1027319 None None Fetal Testis DNase [Search on ENCODE]
GSM1027312 None Melanocyte Foreskin DNase [Search on ENCODE]
GSM1027327 None Epithelium Fetal Small Intestine DNase [Search on ENCODE]
GSM817159 None Epithelium Fetal Kidney DNase [Search on ENCODE]
GSM817161 None Epithelium Fetal Small Intestine DNase [Search on ENCODE]
GSM1014535 RPMI-7951 Melanoma Cell Skin DNase [Search on ENCODE]
GSM1014517 A549 Epithelium Lung DNase [Search on ENCODE]
GSM1014536 T47D Epithelium Mammary Gland DNase [Search on ENCODE]
GSM1014538 M059J Glial Cell Brain DNase [Search on ENCODE]
GSM723023 None Epithelium Fetal Heart DNase [Search on ENCODE]
GSM723022 None Haematopoietic Progenitor Cell Cord blood DNase [Search on ENCODE]
GSM774203 None Epithelium Fetal Heart DNase [Search on ENCODE]
GSM774241 None Fibroblast Foreskin DNase [Search on ENCODE]
GSM774208 None Haematopoietic Progenitor Cell Blood DNase [Search on ENCODE]
GSM1102739 None Epithelium Small Intestine DNase [Search on ENCODE]
GSM1224666 HCT-116 None Colon DNase [Search on ENCODE]
GSM1224667 HCT-116 None Colon DNase [Search on ENCODE]
GSM736506 A549 Epithelium Lung DNase [Search on ENCODE]
GSM736580 A549 Epithelium Lung DNase [Search on ENCODE]
GSM736622 BE2-C Neuroblast Brain DNase [Search on ENCODE]
GSM736508 BE2-C Neuroblast Brain DNase [Search on ENCODE]
GSM1024770 None Haematopoietic Progenitor Cell Blood DNase [Search on ENCODE]
GSM736610 H7 Embryonic Stem Cell Embryo DNase [Search on ENCODE]
GSM736600 HCT-116 None Colon DNase [Search on ENCODE]
GSM736493 HCT-116 None Colon DNase [Search on ENCODE]
GSM736501 Jurkat T Lymphocyte Blood DNase [Search on ENCODE]
GSM736588 MCF-7 Epithelium Breast DNase [Search on ENCODE]
GSM1024764 MCF-7 Epithelium Breast DNase [Search on ENCODE]
GSM1024767 MCF-7 Epithelium Breast DNase [Search on ENCODE]
GSM1024784 MCF-7 Epithelium Breast DNase [Search on ENCODE]
GSM1024783 MCF-7 Epithelium Breast DNase [Search on ENCODE]
GSM1024761 T47D Epithelium Mammary Gland DNase [Search on ENCODE]
GSM1024762 T47D Epithelium Mammary Gland DNase [Search on ENCODE]
GSM736495 WERI-Rb-1 None Eye DNase [Search on ENCODE]
GSM763533 HeLa Epithelium Cervix DNase [Search on ENCODE]
GSM1581821 None Myeloid Cell None DNase [Search on ENCODE]
GSM1581822 None Myeloid Cell None DNase [Search on ENCODE]
GSM1581823 None Myeloid Cell None DNase [Search on ENCODE]
ENCSR148VUP_2 None Haematopoietic Progenitor Cell Blood DNase [Search on ENCODE]
ENCSR240TPI_1 BJ Fibroblast Skin DNase [Search on ENCODE]
ENCSR346JWH_1 A673 Polygonal Muscle DNase [Search on ENCODE]
ENCSR346JWH_2 A673 Polygonal Muscle DNase [Search on ENCODE]
ENCSR426IEA_1 KBM-7 Myeloblast Blood DNase [Search on ENCODE]
ENCSR426IEA_2 KBM-7 Myeloblast Blood DNase [Search on ENCODE]
ENCSR564JUY_1 None Haematopoietic Progenitor Cell Blood DNase [Search on ENCODE]
ENCSR564JUY_2 None Haematopoietic Progenitor Cell Blood DNase [Search on ENCODE]
ENCSR814KRX_1 HT29 None Colon DNase [Search on ENCODE]
ENCSR814KRX_2 HT29 None Colon DNase [Search on ENCODE]
ENCSR845CFB_1 None Haematopoietic Progenitor Cell Blood DNase [Search on ENCODE]
ENCSR845CFB_2 None Haematopoietic Progenitor Cell Blood DNase [Search on ENCODE]
ENCSR489NAM_2 OCI-Ly7 B cell lymphoma Blood DNase [Search on ENCODE]
ENCSR004SUL_2 None iPSC None DNase [Search on ENCODE]
ENCSR627GNV_2 K562 Erythroblast Bone Marrow DNase [Search on ENCODE]
ENCSR154AVE_1 K562 Erythroblast Bone Marrow DNase [Search on ENCODE]
ENCSR622RJN_1 K562 Erythroblast Bone Marrow DNase [Search on ENCODE]
ENCSR622RJN_2 K562 Erythroblast Bone Marrow DNase [Search on ENCODE]
ENCSR000FEK_1 MEL Erythroid Progenitor Cell None DNase [Search on ENCODE]
ENCSR000FEK_2 MEL Erythroid Progenitor Cell None DNase [Search on ENCODE]
ENCSR000FEK_3 MEL Erythroid Progenitor Cell None DNase [Search on ENCODE]
ENCSR429RHR_1 RKO Epithelium Colon DNase [Search on ENCODE]
ENCSR514EOB_1 K562 Erythroblast Bone Marrow DNase [Search on ENCODE]
ENCSR621ENC_2 None None Retina DNase [Search on ENCODE]
ENCSR643OAB_1 K562 Erythroblast Bone Marrow DNase [Search on ENCODE]
ENCSR749BWV_2 None None Heart DNase [Search on ENCODE]
ENCSR873PLF_1 K562 Erythroblast Bone Marrow DNase [Search on ENCODE]
ENCSR945ENZ_1 K562 Erythroblast Bone Marrow DNase [Search on ENCODE]
GSM2326844 None t(3;21) paitent None DNase [Search on ENCODE]
Contents
Description
  • Overlapped Record Details
An overlapped record means a match between VIS and 1 of 3 Cistrome factor (histone modification, transcription factor binding site and chromatin accessibility), more specifically, this match includes at least 1 overlap between this VIS and 1 Cistrome factor-related sample from 1 of 3 Cistrome factor data. So one VIS may have several overlaps with multiple Cistrome factor-related samples, the associated factor and overlap amount of samples could indicate that the virus integration site is a potentially functional DNA element.