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EBV VIS-Cistrome Factor Overlapped Record Details

This pages show details of Cistrome factor-ralated samples which overlapped this VIS.
The cistrome refers to "the set of cis-acting targets of a trans-acting factor on a genome-wide scale."


Location chr1: 25103641-25103642 (GRCh38)
GSMID or ENCODE Cell line Cell type Tissue type Factor
GSM530915 MCF-7 Epithelium Breast TFAP2C [Search on ENCODE]
GSM820430 HeLa Epithelium Cervix TERC [Search on ENCODE]
GSM820437 HeLa Epithelium Cervix TERC [Search on ENCODE]
GSM585608 None Hematopoietic Cell None ERG [Search on ENCODE]
GSM902779 None Neural crest cell Cranial TFAP2A [Search on ENCODE]
GSM894103 H2171 Epithelium Lung MAX [Search on ENCODE]
GSM894102 H2171 Epithelium Lung MYC [Search on ENCODE]
GSM1122322 U937 None Pleura CBFB [Search on ENCODE]
GSM1008617 H2171 Epithelium Lung MAX [Search on ENCODE]
GSM1239074 HEK293 Epithelium Embryonic Kidney CREBBP [Search on ENCODE]
GSM935367 HeLa-S3 Epithelium Cervix TFAP2A [Search on ENCODE]
GSM935370 HeLa-S3 Epithelium Cervix TFAP2C [Search on ENCODE]
GSM1817197 None Neural crest cell Cranial TFAP2A [Search on ENCODE]
GSM1817200 None Neural crest cell Cranial TFAP2A [Search on ENCODE]
ENCSR839SFJ_1 None Neuron None SMARCA4 [Search on ENCODE]
ENCSR839SFJ_2 None Neuron None SMARCA4 [Search on ENCODE]
ENCSR889GGV_1 None Neuron None POLR2AphosphoS5 [Search on ENCODE]
ENCSR889GGV_2 None Neuron None POLR2AphosphoS5 [Search on ENCODE]
GSM2232927 BE2-C Neuroblastoma cell Bone Marrow TEAD4 [Search on ENCODE]
GSM2364544 SEM B Lymphocyte None KMT2A [Search on ENCODE]
GSM2544234 THP-1 Macrophage None POLR3D [Search on ENCODE]
GSM2543156 U2OS None None ZBTB48 [Search on ENCODE]
GSM1970152 None Fibroblast Fetal Lung NEUROG2 [Search on ENCODE]
GSM2410317 SK-N-SH Neuroblastoma cell Brain EBF3 [Search on ENCODE]
GSM1897369 MV4-11 Leukemia Cell None KMT2A [Search on ENCODE]
GSM2687534 None Monocyte Blood RUNX1 [Search on ENCODE]
GSM2687535 None Monocyte Blood TET2 [Search on ENCODE]
GSM2467009 Jurkat T Lymphocyte Blood TET2 [Search on ENCODE]
GSM2467011 None None Kidney RUNX1 [Search on ENCODE]
GSM1711858 MKL-1 Merkel cell carcinoma None MAX [Search on ENCODE]
GSM2274677 Jurkat T Lymphocyte Blood TET2 [Search on ENCODE]
GSM2482829 KELLY Neuroblastoma cell None MYCN [Search on ENCODE]
GSM2333815 GM00739 Fibroblast None ATF3 [Search on ENCODE]
GSM2113529 NGP Neuroblastoma cell None MYCN [Search on ENCODE]
GSM2113526 KELLY Neuroblastoma cell None MYCN [Search on ENCODE]
GSM889425 MCF-7 Epithelium Breast TFAP2C [Search on ENCODE]
GSM889426 BT-474 Epithelium Mammary Gland TFAP2C [Search on ENCODE]
GSM889428 SKBR-3 None Mammary Gland TFAP2C [Search on ENCODE]
Contents
Description
  • Overlapped Record Details
An overlapped record means a match between VIS and 1 of 3 Cistrome factor (histone modification, transcription factor binding site and chromatin accessibility), more specifically, this match includes at least 1 overlap between this VIS and 1 Cistrome factor-related sample from 1 of 3 Cistrome factor data. So one VIS may have several overlaps with multiple Cistrome factor-related samples, the associated factor and overlap amount of samples could indicate that the virus integration site is a potentially functional DNA element.