HBV VIS-Cistrome Factor Overlap in each human chromosome

This page provides a heatmap of three VIS-Factors overlap counts by chromosome to help users have a better understanding of the distribution of VIS-Factors overlap in the human genome.

HBV Overall Heatmap

CA: chromatin accessibility TFBS: transcription factor binding site HM: histone modification

Browse data distribution by Chromosome or Factor

*Please select the Chromosome or Factor you are interested in, the page will be automatically redirected.

Chromosome:

Cistrome Factor:

VIS locations with VIS-cistrome overlap information and VIS details for each chromosome

Show VIS with one point

Rank of Overlapped Records (S)	DVID	Location	HM (S)	TFBS (S)	CA (S)	Sum (S)	HM (B)	TFBS (B)	CA (B)	Sum (B)	Case/Length	Detail
1	1000198	235160741, 235160776	3168	267	351	3786	3401	340	574	4315	Case 2 \| 35	View
2	1000269	84078703, 84078738	2669	241	326	3236	2682	246	327	3255	Case 2 \| 35	View
3	1404363	46466668, 46466688	2121	343	349	2813	2142	351	362	2855	Case 2 \| 20	View
4	1000325	10188, 10288	630	1802	366	2798	633	1810	391	2834	Case 2 \| 100	View
5	1404588	224616326, 224616585	1563	576	484	2623	1845	620	499	2964	Case 2 \| 259	View
6	1000491	1777709, 1777806	1339	75	125	1539	1843	99	136	2078	Case 2 \| 97	View
7	1000718	119327969, 119328185	699	554	212	1465	701	598	262	1561	Case 2 \| 216	View
8	1000310	119327322, 119328370	739	113	136	988	1679	925	647	3251	Case 2 \| 1048	View
9	1001006	207822856, 207822922	148	334	498	980	285	380	499	1164	Case 2 \| 66	View
10	1001088	207822805, 207822892	136	263	503	902	190	375	513	1078	Case 2 \| 87	View
11	1001690	121743376, 121743425	450	23	4	477	459	57	7	523	Case 2 \| 49	View
12	1000396	10001, 10090	253	206	15	474	684	1684	145	2513	Case 2 \| 89	View
13	1001681	121743354, 121743443	449	17	5	471	461	59	8	528	Case 2 \| 89	View
14	1002375	153358267, 153358432	167	53	34	254	192	58	34	284	Case 2 \| 165	View
15	1002735	121743447, 121743548	151	55	7	213	151	56	7	214	Case 2 \| 101	View
16	1002757	28237856, 28237899	177	15		192	193	16		209	Case 2 \| 43	View
17	1002026	121743098, 121743196	178	4		182	358	13		371	Case 2 \| 98	View
18	1404347	236785858, 236787555	143	27	2	172	191	76	8	275	Case 2 \| 1697	View
19	1002767	212077134, 212077169	6	76	90	172	6	102	100	208	Case 2 \| 35	View
20	1002958	121742953, 121743042	166	4		170	178	6		184	Case 2 \| 89	View
21	1002965	34189085, 34189185	122	36	6	164	135	42	6	183	Case 2 \| 100	View
22	1404265	157125813, 157126355	134	6	2	142	157	20	2	179	Case 2 \| 542	View
23	1002760	35873469, 35874519	117	13	9	139	159	39	12	210	Case 2 \| 1050	View
24	1002979	34188965, 34189064	93	10	15	118	129	36	16	181	Case 2 \| 99	View
25	1003696	186473291, 186473326	50	54	12	116	50	54	12	116	Case 2 \| 35	View
26	1003678	155731942, 155732033	12	92	10	114	15	92	11	118	Case 2 \| 91	View
27	1002877	39969937, 39970037	51	42	18	111	62	87	47	196	Case 2 \| 100	View
28	1002044	22685482, 22686530	50	3	56	109	110	50	210	370	Case 2 \| 1048	View
29	1001613	18724327, 18730494	69	15	21	105	195	326	125	646	Case 2 \| 6167	View
30	1003796	248944996, 248945053	39	35	30	104	41	36	32	109	Case 2 \| 57	View
31	1003444	47354646, 47355694	8	80	4	92	28	102	4	134	Case 2 \| 1048	View
32	1003554	57440378, 57441426	12	54	24	90	42	59	24	125	Case 2 \| 1048	View
33	1404590	31510376, 31510425	29	59	2	90	30	73	5	108	Case 2 \| 49	View
34	1003843	35873691, 35874113	79	7	1	87	89	16	1	106	Case 2 \| 422	View
35	1004423	121743552, 121743636	23	52	7	82	23	52	7	82	Case 2 \| 84	View
36	1004158	22002033, 22003002	73			73	86	5		91	Case 2 \| 969	View
37	1001495	196466418, 196467466	23	17	32	72	294	137	273	704	Case 2 \| 1048	View
38	1004667	196245258, 196245303	69	3		72	70	3		73	Case 2 \| 45	View
39	1002126	213973056, 213974104	33	12	22	67	123	100	119	342	Case 2 \| 1048	View
40	1002599	206931924, 206932972	21	34	12	67	105	75	66	246	Case 2 \| 1048	View
41	1004112	210885206, 210886256	60	7		67	83	13	1	97	Case 2 \| 1050	View
42	1004646	210885368, 210885851	57	8		65	64	10		74	Case 2 \| 483	View
43	1004924	106595380, 106595415	11	46	5	62	11	50	5	66	Case 2 \| 35	View
44	1404205	119364639, 119364691	45	12	4	61	52	18	22	92	Case 2 \| 52	View
45	1004510	78722610, 78722645	35	7	18	60	36	11	32	79	Case 2 \| 35	View
46	1004932	222927005, 222927094	11	27	21	59	16	28	22	66	Case 2 \| 89	View
47	1005078	219433815, 219433850	7	4	43	54	8	8	46	62	Case 2 \| 35	View
48	1005412	232539657, 232539692	45	6		51	48	7		55	Case 2 \| 35	View
49	1005516	49865156, 49865254	44	4	2	50	46	5	2	53	Case 2 \| 98	View
50	1004970	177937131, 177937166	40	7		47	55	9	1	65	Case 2 \| 35	View
51	1000386	206527568, 206932576	46	1		47	8085	7935	2078	18098	Case 2 \| 405008	View
52	1404175	167364755, 167364757	31	11	1	43	31	11	1	43	Case 2 \| 2	View
53	1404369	67427965, 67427995	37	6		43	39	10		49	Case 2 \| 30	View
54	1005472	121742268, 121742350	41			41	54			54	Case 2 \| 82	View
55	1006264	247115842, 247116866	29	10		39	30	11		41	Case 2 \| 1024	View
56	1006336	14786459, 14786494	4	20	14	38	4	21	15	40	Case 2 \| 35	View
57	1006203	36462163, 36462227	33	4		37	38	4		42	Case 2 \| 64	View
58	1404610	111118335, 111118360	35	1		36	36	1		37	Case 2 \| 25	View
59	1004517	210207584, 210208632	22	13		35	38	43	4	85	Case 2 \| 1048	View
60	1006715	160238016, 160238051	33			33	35			35	Case 2 \| 35	View
61	1002900	232871204, 232872252	21	3	8	32	109	68	18	195	Case 2 \| 1048	View
62	1005566	119748429, 119748841	12	18		30	24	28		52	Case 2 \| 412	View
63	1006796	161223348, 161223418	22	7		29	23	11		34	Case 2 \| 70	View
64	1007491	49865312, 49865403	25	1		26	26	1		27	Case 2 \| 91	View
65	1007592	20106985, 20107085	25			25	26			26	Case 2 \| 100	View
66	1007717	15914823, 15914858	25			25	25			25	Case 2 \| 35	View
67	1404609	174197140, 174197952	18	5		23	66	52	23	141	Case 2 \| 812	View
68	1003713	176724372, 176725420	4	15	3	22	26	78	16	120	Case 2 \| 1048	View
69	1007376	161222915, 161223051	20			20	23	5		28	Case 2 \| 136	View
70	1002630	203189314, 203190362	15	5		20	81	58	105	244	Case 2 \| 1048	View
71	1003492	176724614, 176725662	8	7	5	20	34	88	9	131	Case 2 \| 1048	View
72	1000464	210804168, 210885853	17	2		19	1586	1058	492	3136	Case 2 \| 81685	View
73	1007359	20106884, 20106982	19			19	28			28	Case 2 \| 98	View
74	1008423	232843543, 232843578	8	4	6	18	9	6	6	21	Case 2 \| 35	View
75	1007741	161222521, 161222915	17			17	25			25	Case 2 \| 394	View
76	1000415	57441027, 57875010	16	1		17	2271	2852	1118	6241	Case 2 \| 433983	View
77	1404260	53002187, 53002206	12	5		17	12	5		17	Case 2 \| 19	View
78	1404478	41118325, 41118342	2	11	3	16	2	11	3	16	Case 2 \| 17	View
79	1009430	235111283, 235111318	11	3	2	16	11	3	2	16	Case 2 \| 35	View
80	1007079	56247119, 56248167	3	6	7	16	9	10	12	31	Case 2 \| 1048	View
81	1006404	35472988, 35473077	15	1		16	38	1		39	Case 2 \| 89	View
82	1009054	43192146, 43192251	15	1		16	17	1		18	Case 2 \| 105	View
83	1009431	157798774, 157798809	16			16	16			16	Case 2 \| 35	View
84	1008424	234923774, 234923901	12	3		15	16	5		21	Case 2 \| 127	View
85	1008014	28180342, 28180377	11	4		15	14	8	1	23	Case 2 \| 35	View
86	1404589	175949210, 175949213	7	6		13	7	6		13	Case 2 \| 3	View
87	1010241	213874747, 213874782	12		1	13	12		1	13	Case 2 \| 35	View
88	1008849	89556610, 89556737	12	1		13	14	3	2	19	Case 2 \| 127	View
89	1010556	238099592, 238099595	12			12	12			12	Case 2 \| 3	View
90	1010833	67209912, 67210003	4	4	3	11	4	4	3	11	Case 2 \| 91	View
91	1009068	210803981, 210804159	10	1		11	17	1		18	Case 2 \| 178	View
92	1008422	89556285, 89556672	9	1		10	17	3	1	21	Case 2 \| 387	View
93	1011517	179370661, 179370696	2	7		9	2	7		9	Case 2 \| 35	View
94	1004114	119641352, 119642400	8	1		9	78	11	4	93	Case 2 \| 1048	View
95	1006086	59530158, 59531206		7	1	8	9	25	10	44	Case 2 \| 1048	View
96	1404491	238094839, 238094871	2	6		8	5	7		12	Case 2 \| 32	View
97	1010240	9510900, 9510947	2	3	3	8	3	4	6	13	Case 2 \| 47	View
98	1012416	67210028, 67210126	5	2		7	5	2		7	Case 2 \| 98	View
99	1011538	179100585, 179100666	6		1	7	7	1	1	9	Case 2 \| 81	View
100	1005259	1581963, 1583011	7			7	39	16	5	60	Case 2 \| 1048	View
101	1404397	238458374, 238458376	4	3		7	4	3		7	Case 2 \| 2	View
102	1404362	150610529, 150610553	6	1		7	6	1		7	Case 2 \| 24	View
103	1005614	176724878, 176725258	1	6		7	5	44	2	51	Case 2 \| 380	View
104	1011527	67209211, 67209303	5	1		6	8	1		9	Case 2 \| 92	View
105	1004253	231831380, 231832428	2	4		6	27	29	32	88	Case 2 \| 1048	View
106	1007611	240205464, 240206512	4	2		6	22	5		27	Case 2 \| 1048	View
107	1404142	50019384, 50019414	3	2	1	6	3	2	1	6	Case 2 \| 30	View
108	1009265	8272200, 8273248	2	3		5	8	6	3	17	Case 2 \| 1048	View
109	1012946	187843829, 187843950	2	2	1	5	2	3	1	6	Case 2 \| 121	View
110	1013063	103283, 103541	5			5	5			5	Case 2 \| 258	View
111	1004768	178624522, 178625570	4	1		5	65	5	1	71	Case 2 \| 1048	View
112	1014292	110323701, 110323706	3	1		4	3	1		4	Case 2 \| 5	View
113	1012450	89174490, 89174558	4			4	7			7	Case 2 \| 68	View
114	1013548	74805126, 74805161	4			4	5			5	Case 2 \| 35	View
115	1404430	156547868, 156547876	4			4	4			4	Case 2 \| 8	View
116	1012932	207695108, 207695179	3		1	4	5		1	6	Case 2 \| 71	View
117	1014270	51010780, 51010798	4			4	4			4	Case 2 \| 18	View
118	1015016	223342819, 223342854	2	1		3	2	1		3	Case 2 \| 35	View
119	1011955	27062798, 27062898	3			3	7	1		8	Case 2 \| 100	View
120	1404334	235191269, 235191271	2			2	2			2	Case 2 \| 2	View
121	1005253	210803521, 210804571	1	1		2	48	10		58	Case 2 \| 1050	View
122	1002774	235976057, 235977105	2			2	129	68	10	207	Case 2 \| 1048	View
123	1100025	16583474, 16583566	2			2	2			2	Case 2 \| 92	View
124	1015040	187843933, 187844080		2		2		2	1	3	Case 2 \| 147	View
125	1015209	144464906, 144464985	2			2	2			2	Case 2 \| 79	View
126	1005302	119752548, 119752677	2			2	49	7	1	57	Case 2 \| 129	View
127	1017339	27055627, 27055726	1			1	1			1	Case 2 \| 99	View
128	1015139	117657985, 117658084	1			1	1	2		3	Case 2 \| 99	View
129	1016020	87217150, 87217249	1			1	1		1	2	Case 2 \| 99	View
130	1017447	217129697, 217129704		1		1		1		1	Case 2 \| 7	View
131	1015208	97266480, 97266500	1			1	1	1		2	Case 2 \| 20	View
132	1016225	194192761, 194192780	1			1	1			1	Case 2 \| 19	View
133	1011993	194346625, 194346867	1			1	5	3		8	Case 2 \| 242	View
134	1015126	217205268, 217205327	1			1	2	1		3	Case 2 \| 59	View
135	1015982	167321575, 167321610	1			1	2			2	Case 2 \| 35	View
136	1016007	106379398, 106379499				0	2			2	Case 2 \| 101	View
137	1019735	120026990, 120027084				0				0	Case 2 \| 94	View
138	1019991	420, 437				0				0	Case 2 \| 17	View
139	1019912	104206995, 104207094				0				0	Case 2 \| 99	View
140	1020024	249239959, 249241007				0				0	Case 2 \| 1048	View
141	1404524	149155693, 149155710				0				0	Case 2 \| 17	View
142	1019670	240233543, 240233578				0				0	Case 2 \| 35	View
143	1019941	49700383, 49700472				0				0	Case 2 \| 89	View
144	1012473	214784383, 214785431				0	2	5		7	Case 2 \| 1048	View
145	1017318	42640196, 42640231				0		1		1	Case 2 \| 35	View
146	1019698	102634567, 102634665				0				0	Case 2 \| 98	View
147	1019988	36423, 37471				0				0	Case 2 \| 1048	View
148	1006266	56195551, 56196599				0	18	18	5	41	Case 2 \| 1048	View
149	1000280	9625, 10673				0	819	1923	397	3139	Case 2 \| 1048	View

View VIS-VM Association

View the association between Viral Integration Sequence (VIS) and Virus Mutation (VM) in HBV

Contents
Description

VIS-Cistrome factor overlapping Description

The overlaps between integration site and cistrome are retrieved by genome search engine GIGGLE (Ryan M Layer et al. 2018). We built three indexs including histone modification, transcription factor binding site and chromatin accessibility, then we searched the significance of shared genomic loci (overlaps) between query VIS and Cistrome (Rongbin Zheng et al. 2019) genome interval files. So one VIS may have several overlaps with multiple Cistrome factor-related samples, the associated factor and overlap amount could indicate that the virus integration site is a potentially functional DNA element.

HBV Overall Heatmap

This heatmap is an overall statistics for HBV VIS-Cistrome factor overlapped records by chromosome. The darker the red, the greater the overlapped records number. The user can view specific number by moving mouse pointer.

Browse data by Chromosome or Factor

The user can browse HBV VIS-Cistrome factor overlapped records data by specific chromosome or statistics histogram for specific Cistrome factor when users click the chromosome or Cistrome factor the user are interested in.

VIS locations with VIS-cistrome overlap information and VIS details for each chromosome

This table showed the VIS locations with VIS-cistrome overlap information and VIS details for each chromosome, you can click green button with number which indicates the overlapped records of this VIS and 3 cistrome factor (histone modification, transcription factor binding site and chromatin accessibility) to inspect details of cistrome sample and factor information, you can click "Detail" button to inspect other information of this VIS.

Case 1
： The deletion of human fragments during the integration event.

Case 2
： Due to the experimental method/design, two viral insertion positions were provided in the literature.
Length:
~40 bp

41 bp~1000 bp

1001 bp~


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