HPV VIS Detail Information

> This page shows VIS [5402881] detail information, including site information (chromosome, GRCh38 location, disease, sample, etc) and literature information.


Site Information
DVID 5402881
Chromosome chr2
GRCh38 Location 120912588
Disease Hepatocellular carcinoma  
Sample Tumor
Target Gene GLI2     
Literature Information
PubMed PMID 30016933
Published year 2018
Journal BMC bioinformatics
Title HGT-ID: an efficient and sensitive workflow to detect human-viral insertion sites using next-generation sequencing data.
Author Baheti S,Tang X,O'Brien DR,Chia N,Roberts LR,Nelson H,Boughey JC,Wang L,Goetz MP,Kocher JA,Kalari KR
Evidence We applied HGT-ID to The Cancer Genome Atlas (TCGA) whole-genome sequencing data (WGS) from liver tumor-normal pairs. Multiple hepatitis B virus (HBV) integration sites were identified in TCGA liver samples and confirmed by HGT-ID using the RNA-Seq data from the matched liver pairs.

Contents
Description
  • Site Information
Detail information of site [5402881]
  • Literature Information
The details of literature that this site is associated with.