HPV VIS Detail Information

> This page shows VIS [5402875] detail information, including site information (chromosome, GRCh38 location, disease, sample, etc) and literature information.

Site Information

Literature Information

PubMed PMID	30016933
Published year	2018
Journal	BMC bioinformatics
Title	HGT-ID: an efficient and sensitive workflow to detect human-viral insertion sites using next-generation sequencing data.
Author	Baheti S,Tang X,O'Brien DR,Chia N,Roberts LR,Nelson H,Boughey JC,Wang L,Goetz MP,Kocher JA,Kalari KR
Evidence	We applied HGT-ID to The Cancer Genome Atlas (TCGA) whole-genome sequencing data (WGS) from liver tumor-normal pairs. Multiple hepatitis B virus (HBV) integration sites were identified in TCGA liver samples and confirmed by HGT-ID using the RNA-Seq data from the matched liver pairs.