HPV VIS Detail Information

> This page shows VIS [5200287] detail information, including site information (chromosome, GRCh38 location, disease, sample, etc) and literature information.


Site Information
DVID 5200287
Chromosome chr1
GRCh38 Location 198698079
Disease Cervical carcinoma  
Target Gene PTPRC     
Literature Information
PubMed PMID 32714374
Published year 2020
Journal Frontiers in genetics
Title Accurate Detection of HPV Integration Sites in Cervical Cancer Samples Using the Nanopore MinION Sequencer Without Error Correction.
Author Yang W,Liu Y,Dong R,Liu J,Lang J,Yang J,Wang W,Li J,Meng B,Tian G
Evidence Among the top five most abundant breakpoints, There were 3 located in chromosome 20, HPV16:2804,chr20:32516985 (406 reads), HPV16:7139,chr20:32478733 (169 reads), HPV16:4276,chr20:32502143(51 reads), and two were in chrX, HPV16:5534,chrX:20464412 (132 reads), HPV16:3163,chrX: 20462930 (50 reads). Figure 3B indicates the integration site distribution in the HPV genome. Within the 60 identified integration sites, 18 were in the L2 gene, 12 in L1, 11 in E1, 7 in E2, and <4 in the each of the other genes (E6, LCR, E5, and E7).

Contents
Description
  • Site Information
Detail information of site [5200287]
  • Literature Information
The details of literature that this site is associated with.