HPV VIS Detail Information

> This page shows VIS [5002523] detail information, including site information (chromosome, GRCh38 location, disease, sample, etc) and literature information.


Site Information
DVID 5002523
VISID TVIS20000712
Chromosome chr1
GRCh38 Location 15748495
Disease   
Sample Tumor
Virus Reference Genome NC_001526.2
Target Gene SLC25A34-AS1     
Literature Information
PubMed PMID 25581428
Published year 2015
Journal Nature genetics
Title Genome-wide profiling of HPV integration in cervical cancer identifies clustered genomic hot spots and a potential microhomology-mediated integration mechanism.
Author Hu Z,Zhu D,Wang W,Li W,Jia W,Zeng X,Ding W,Yu L,Wang X,Wang L,Shen H,Zhang C,Liu H,Liu X,Zhao Y,Fang X,Li S,Chen W,Tang T,Fu A,Wang Z,Chen G,Gao Q,Li S,Xi L,Wang C,Liao S,Ma X,Wu P,Li K,Wang S,Zhou J,Wang J,Xu X,Wang H,Ma D
Evidence Human papillomavirus (HPV) integration is a key genetic event in cervical carcinogenesis. By conducting whole-genome sequencing and high-throughput viral integration detection, we identified 3,667 HPV integration breakpoints in 26 cervical intraepithelial neoplasias, 104 cervical carcinomas and five cell lines. Beyond recalculating frequencies for the previously reported frequent integration sites POU5F1B (9. Protein expression from FHIT and LRP1B was downregulated when HPV integrated in their introns. Protein expression from MYC and HMGA2 was elevated when HPV integrated into flanking regions. Moreover, microhomologous sequence between the human and HPV genomes was significantly enriched near integration breakpoints, indicating that fusion between viral and human DNA may have occurred by microhomology-mediated DNA repair pathways. Our data provide insights into HPV integration-driven cervical carcinogenesis.

Contents
Description
  • Site Information
Detail information of site [5002523]
  • Literature Information
The details of literature that this site is associated with.