Home
Virus
Gene
Disease
Dataset
Download
Help
 
HBV Target gene Detail Information

> SHISA6 Gene Search Result


Gene Information
Gene Name SHISA6
Gene ID 388336
Gene Full Name shisa family member 6
Transcripts ENSG00000188803
Virus HBV
Gene Type protein coding
HPA Location Info Nucleoplasm;Plasma membrane;
Membrane Info Predicted membrane proteins
HPA Protein Class Info Predicted membrane proteins, Transporters
Uniport_ID Q6ZSJ9
HGNC ID HGNC:34491
VEGA ID OTTHUMG00000154121
OMIM ID 617327
String ID 9606.ENSP00000390084
PharmGKB ID PA165432740
Target gene [SHISA6] related to VISs
DVID Chromosome HM TFBS CA Sum of Overlapped Records Detail
1005604 chr17 50 1 51 View
1006390 chr17 7 2 30 39 View
1012681 chr17 6 6 View
1013791 chr17 4 4 View
1013887 chr17 4 4 View
1016781 chr17 1 1 View
1016782 chr17 1 1 View
1019717 chr17 0 View
1400594 chr17 4 4 View

Relationship between gene expression and immune infiltrating cell level
Data ID Disease Sample number Sample type
LIHC (TCGA) Liver hepatocellular carcinoma 424 Liver hepatocellular carcinoma HCV (HBV+)(86), Liver hepatocellular carcinoma HCV (HBV-)(19), Liver hepatocellular carcinoma (HBV+)(209), Liver hepatocellular carcinoma (HBV+)(60), Paracancerous HCV (HBV+)(4), Paracancerous (HBV-)(28), Paracancerous (HBV+)(18)

> Dataset: LIHC

HeatMap of cell type fractions in all samples Lollipop of SHISA6 expression and immune infiltrating cell level correlation result in HBV+ samples
SHISA6 expression: Low -> High
Contents
Description

Gene Information Note

  • Integration Table: if previous studies reported that target gene was altered by virus integration events, the overlap between VISs in this literature and Cistrome factors was listed in the "Target gene [gene] related to VIS" section

Immune Analysis Plot Note

  • Left: Heatmap of target gene expression and the level of various types of immune cells (cell type fractions) in all samples based on CIBERSORT method.
  • Right: Correlation of target gene expression and the level of various types of immune cells in virus positive samples (Pearson Correlation Coefficient).