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HIV Target gene Detail Information

> HNRNPM Gene Search Result


Gene Information
Gene Name HNRNPM
Gene ID 4670
Gene Full Name heterogeneous nuclear ribonucleoprotein M
Gene Alias CEAR; HNRPM; HTGR1; NAGR1; HNRPM4; HNRNPM4; hnRNP M
Transcripts ENSG00000099783
Virus HIV
Gene Type protein coding
HPA Location Info Nucleoplasm;
HPA Protein Class Info Plasma proteins, Predicted intracellular proteins
Uniport_ID P52272
HGNC ID HGNC:5046
VEGA ID OTTHUMG00000182383
OMIM ID 160994
String ID 9606.ENSP00000325376
PharmGKB ID PA29370
Target gene [HNRNPM] related to VISs
DVID Chromosome HM TFBS CA Sum of Overlapped Records Detail
4000187 chr19 243 365 185 793 View
4000243 chr19 367 196 95 658 View
4001466 chr19 89 17 55 161 View
4002031 chr19 59 51 6 116 View
4002033 chr19 59 51 6 116 View
4002043 chr19 46 12 58 116 View
4002044 chr19 46 12 58 116 View
4002092 chr19 44 11 58 113 View
4002114 chr19 15 44 52 111 View
4002128 chr19 42 11 58 111 View
4002255 chr19 38 8 57 103 View
4002455 chr19 31 8 55 94 View
4002643 chr19 24 8 54 86 View
4002736 chr19 23 8 51 82 View
4003134 chr19 16 7 46 69 View
4003170 chr19 16 6 46 68 View
4003260 chr19 2 54 9 65 View
4004723 chr19 39 1 40 View
4004751 chr19 9 4 27 40 View
4005052 chr19 33 3 36 View
4005360 chr19 29 4 33 View
4005737 chr19 20 9 1 30 View
4006107 chr19 27 27 View
4006965 chr19 7 12 2 21 View
4006966 chr19 7 12 2 21 View
4006967 chr19 7 12 2 21 View
4006968 chr19 7 12 2 21 View
4007846 chr19 16 1 17 View
4007847 chr19 3 2 12 17 View
4008008 chr19 6 1 10 17 View
4008201 chr19 12 4 16 View
4008540 chr19 6 1 8 15 View
4009079 chr19 5 1 7 13 View
4009383 chr19 5 1 6 12 View
4009745 chr19 5 1 5 11 View
4010376 chr19 7 2 9 View
4010964 chr19 5 1 2 8 View
4010965 chr19 5 1 2 8 View
4011461 chr19 5 1 1 7 View

Relationship between gene expression and immune infiltrating cell level
Data ID Disease Sample number Sample type
GSE17372 (GEO) AIDS-associated lymphoma 17 AIDS-Related Lymphomas (HIV+)(17)
GSE50834 (GEO) HIV-infected disease 44 HIV infected (23), HIV/TB co-infected (21)

> Dataset: GSE17372

HeatMap of cell type fractions in all samples Lollipop of HNRNPM expression and immune infiltrating cell level correlation result in HIV+ samples
HNRNPM expression: Low -> High

> Dataset: GSE50834

HeatMap of cell type fractions in all samples Lollipop of HNRNPM expression and immune infiltrating cell level correlation result in HIV+ samples
HNRNPM expression: Low -> High
Contents
Description

Gene Information Note

  • Integration Table: if previous studies reported that target gene was altered by virus integration events, the overlap between VISs in this literature and Cistrome factors was listed in the "Target gene [gene] related to VIS" section

Immune Analysis Plot Note

  • Left: Heatmap of target gene expression and the level of various types of immune cells (cell type fractions) in all samples based on CIBERSORT method.
  • Right: Correlation of target gene expression and the level of various types of immune cells in virus positive samples (Pearson Correlation Coefficient).