HIV Target gene Detail Information

> C1orf43 Gene Search Result

Gene Information

Gene Name	C1orf43
Gene ID	25912
Gene Full Name	chromosome 1 open reading frame 43
Gene Alias	NICE3; NICE-3; S863-3; HSPC012; NS5ATP4
Transcripts	ENSG00000143612
Virus	HIV
Gene Type	protein coding
HPA Location Info
Membrane Info	Predicted membrane proteins
HPA Protein Class Info	Predicted intracellular proteins, Predicted membrane proteins
Uniport_ID	Q9BWL3
HGNC ID	HGNC:29876
VEGA ID	OTTHUMG00000035981
OMIM ID	617428
String ID	9606.ENSP00000357507
PharmGKB ID	PA134961848

Target gene [C1orf43] related to VISs

DVID	Chromosome	HM	TFBS	CA	Sum of Overlapped Records	Detail
4000518	chr1	59	129	216	404	View
4001315	chr1	179			179	View
4002405	chr1	93	2	1	96	View
4009884	chr1	8	2		10	View

Relationship between gene expression and immune infiltrating cell level

Data ID	Disease	Sample number	Sample type
GSE17372 (GEO)	AIDS-associated lymphoma	17	AIDS-Related Lymphomas (HIV+)(17)

> Dataset: GSE17372
HeatMap of cell type fractions in all samples	Lollipop of C1orf43 expression and immune infiltrating cell level correlation result in HIV+ samples
C1orf43 expression: Low -> High

Contents
Description

Gene Information Note

Integration Table: if previous studies reported that target gene was altered by virus integration events, the overlap between VISs in this literature and Cistrome factors was listed in the "Target gene [gene] related to VIS" section

Immune Analysis Plot Note

Left: Heatmap of target gene expression and the level of various types of immune cells (cell type fractions) in all samples based on CIBERSORT method.
Right: Correlation of target gene expression and the level of various types of immune cells in virus positive samples (Pearson Correlation Coefficient).