HIV VIS-Cistrome Factor Overlapped Record Details

This pages show details of Cistrome factor-ralated samples which overlapped this VIS.
The cistrome refers to "the set of cis-acting targets of a trans-acting factor on a genome-wide scale."


Show overlaps from virus related biological source
VIS [DVID: 4000518] Location [chr1: 154213414] (GRCh38)
Factor Rank on this VIS Factor Name Overlapped Records Details
1 JUN 15 View
2 FOS 11 View
3 GATA3 8 View
4 JUND 8 View
5 FOSL1 6 View
6 FOXA2 6 View
7 EP300 6 View
8 FOSL2 5 View
9 ATF3 5 View
10 SMARCA4 4 View
11 TEAD1 4 View
12 BRD4 4 View
13 STAT3 3 View
14 YAP1 2 View
15 GATA4 2 View
16 JUNB 2 View
17 NR3C1 2 View
18 FOXA1 2 View
19 RELA 2 View
20 GATA2 2 View
21 GATA1 2 View
22 RCOR1 2 View
23 MAFK 2 View
24 NFE2 2 View
25 NFE2L2 1 View
26 SS18 1 View
27 SMARCB1 1 View
28 RUNX1 1 View
29 MAX 1 View
30 E2F1 1 View
31 TP53 1 View
32 MED1 1 View
33 NKX2-1 1 View
34 BHLHE40 1 View
35 E2F7 1 View
36 PBX2 1 View
37 E2F4 1 View
38 KLF1 1 View
39 DAXX 1 View
40 GATA6 1 View
41 POLR2A 1 View
42 SMAD3 1 View
43 CEBPB 1 View
44 TCF12 1 View
45 PBX3 1 View
46 ATF1 1 View


> Click to view overlapped records detail between VIS [DVID: 4000518] and all transcription factor binding site


Contents
Description
  • Table Description
This table at top of page is factor ranked by overlap number. The overlap number refers to the overlapping count between VIS selected and one sepecific cistrome factor. The user can click biological source filter with blue button to keep the overlaps which are associated with virus-related diseases based on cistrome sample's biological source.
  • Overlap
An overlap means a match between VIS and 1 of 3 Cistrome data (histone modification, transcription factor binding site and chromatin accessibility), more specifically, this match includes at least 1 overlap between this VIS and 1 Cistrome factor-related sample from 1 of 3 Cistrome factor data. So one VIS may have several overlaps with multiple Cistrome factor-related samples, the associated factor and overlap amount of samples could indicate that the virus integration site is a potentially functional DNA element.