Virus Dataset Sample Info

> Dataset: 28373061 Search Result


Summary
Item Summary
Project 28373061
Virus Name HBV
Sample Number 20
Disease Liver cancer
Country Korea
Data Link https://www.ncbi.nlm.nih.gov/nuccore/?term=KY363252:KY363287[pacc]

Sample
ID Sample ID Age Gender Origin Detail
1 1 43 M Korea View
2 6 43 M Korea View
3 2 48 M Korea View
4 7 43 M Korea View
5 3 58 F Korea View
6 8 56 F Korea View
7 4 57 M Korea View
8 9 55 M Korea View
9 5 46 M Korea View
10 10 45 M Korea View
11 11 65 M Korea View
12 12 63 M Korea View
13 13 53 M Korea View
14 14 48 M Korea View
15 15 57 M Korea View
16 16 54 M Korea View
17 17 52 M Korea View
18 18 50 M Korea View
19 19 36 M Korea View
20 20 39 M Korea View

Literature
Item Summary
PMID 28373061
Title Sequence analysis and functional characterization of full-length hepatitis B virus genomes from Korean cirrhotic patients with or without liver cancer.
Abstract This study aimed to identify and characterize mutations in the hepatitis B virus (HBV) genome associated with advanced liver diseases. The 3.2-kb HBV genome of the C2 subgenotype was amplified from sera of 18 cirrhotic Korean patients with (10) or without (8) hepatocellular carcinoma (HCC), and two clones per patient were characterized by transient transfection experiments in human hepatoma cells. While A1762T/G1764A core promoter mutations were highly prevalent in both groups, the G1896A precore mutation to abolish hepatitis B e antigen (HBeAg) expression was more common in HCC clones (55% vs. 20%). High replication capacity was mostly found in HCC clones and associated with core promoter mutations, whereas more non-HCC clones harbored a nonfunctional core gene (34% vs. 8%). Large in-frame deletions in the preS region were found in 60% of HCC clones and 38% of non-HCC clones. They removed the first 11 residues of large envelope protein or impaired small envelope protein expression, or deleted a neutralizing epitope in the preS2 domain. Additional point mutations prevented middle envelope protein expression, or caused nonsense mutations in the preS or S region to truncate large and/or small envelope protein. Consequently, many clones were unable to express or secrete hepatitis B surface antigen (HBsAg). In conclusion, mutations associated with the advanced stage of chronic HBV infection are complex and diverse. Host immune pressure most likely selected for mutations in the HBV genome to abolish or reduce HBeAg or HBsAg production, to enhance genome replication, or to escape neutralizing antibodies. Some of these mutations may contribute to liver cirrhosis or HCC development.