Virus Dataset Sample Info

> Dataset: 27064257 Search Result


Summary
Item Summary
Project 27064257
Virus Name HBV; AAV2
Sample Number 300
Disease Liver cancer
Country Japan
Data Link https://www.ebi.ac.uk/ega/studies/EGAS00001000217
https://www.ebi.ac.uk/ega/studies/EGAS00001000679
https://www.ebi.ac.uk/ega/studies/EGAS00001001002
https://dcc.icgc.org/releases/release_18

Sample
ID Sample ID Age Gender Origin Detail
1 RK001 56 M Japan View
2 RK002 62 M Japan View
3 RK003 71 M Japan View
4 RK004 76 M Japan View
5 RK005 66 M Japan View
6 RK006_1 69 M Japan View
7 RK006_2 69 M Japan View
8 RK007 69 M Japan View
9 RK010 46 M Japan View
10 RK012 63 M Japan View
11 RK014 47 M Japan View
12 RK015 61 M Japan View
13 RK016 63 F Japan View
14 RK018 63 M Japan View
15 RK019 74 M Japan View
16 RK020 58 M Japan View
17 RK021 81 M Japan View
18 RK022 73 F Japan View
19 RK023 74 M Japan View
20 RK024 61 M Japan View
21 RK025 78 F Japan View
22 RK026 58 M Japan View
23 RK027 73 M Japan View
24 RK028 79 F Japan View
25 RK029 61 M Japan View
26 RK030 60 M Japan View
27 RK031 53 M Japan View
28 RK032 64 M Japan View
29 RK033 77 M Japan View
30 RK034 38 M Japan View
31 RK035 63 M Japan View
32 RK036 73 M Japan View
33 RK037 69 M Japan View
34 RK038 80 F Japan View
35 RK040 83 F Japan View
36 RK041 78 M Japan View
37 RK042 57 M Japan View
38 RK043 60 M Japan View
39 RK044 70 F Japan View
40 RK046_1 64 M Japan View
41 RK046_2 64 M Japan View
42 RK047 77 F Japan View
43 RK048 69 M Japan View
44 RK049 62 M Japan View
45 RK050 65 M Japan View
46 RK051 74 M Japan View
47 RK052 76 M Japan View
48 RK053 76 M Japan View
49 RK054 75 M Japan View
50 RK055 67 M Japan View
51 RK056 74 M Japan View
52 RK057 64 M Japan View
53 RK058 56 M Japan View
54 RK059 81 M Japan View
55 RK060 71 M Japan View
56 RK061 63 M Japan View
57 RK062 74 M Japan View
58 RK063 81 F Japan View
59 RK064 78 F Japan View
60 RK065 84 F Japan View
61 RK066 72 F Japan View
62 RK067 89 M Japan View
63 RK068 32 F Japan View
64 RK069 85 F Japan View
65 RK070 80 M Japan View
66 RK071 61 F Japan View
67 RK072 68 F Japan View
68 RK073 62 M Japan View
69 RK074 69 M Japan View
70 RK075 62 M Japan View
71 RK076 67 M Japan View
72 RK077 58 M Japan View
73 RK079 51 M Japan View
74 RK080 86 F Japan View
75 RK081 72 M Japan View
76 RK082 49 M Japan View
77 RK083 71 F Japan View
78 RK084 67 F Japan View
79 RK085 65 M Japan View
80 RK086 68 M Japan View
81 RK087 59 M Japan View
82 RK088 63 M Japan View
83 RK089 70 M Japan View
84 RK090 82 F Japan View
85 RK091 76 M Japan View
86 RK092 58 M Japan View
87 RK093 52 M Japan View
88 RK095 71 F Japan View
89 RK096 65 M Japan View
90 RK098 69 F Japan View
91 RK099 78 M Japan View
92 RK100 75 F Japan View
93 RK101 71 M Japan View
94 RK102 66 M Japan View
95 RK103 67 M Japan View
96 RK104 72 M Japan View
97 RK105 69 M Japan View
98 RK106 45 F Japan View
99 RK107 57 F Japan View
100 RK108 74 M Japan View
101 RK109 84 M Japan View
102 RK110 72 M Japan View
103 RK111 57 M Japan View
104 RK112 83 M Japan View
105 RK113 53 M Japan View
106 RK115 68 F Japan View
107 RK116 78 F Japan View
108 RK117 71 F Japan View
109 RK118 61 M Japan View
110 RK119 72 F Japan View
111 RK120 60 M Japan View
112 RK121 71 F Japan View
113 RK122 75 M Japan View
114 RK123 73 F Japan View
115 RK124 67 M Japan View
116 RK125 56 M Japan View
117 RK126 58 M Japan View
118 RK128 79 M Japan View
119 RK130 42 M Japan View
120 RK131 67 M Japan View
121 RK133 49 M Japan View
122 RK134 77 M Japan View
123 RK135 73 F Japan View
124 RK136 63 M Japan View
125 RK137 74 F Japan View
126 RK138 75 F Japan View
127 RK139 71 M Japan View
128 RK140 65 M Japan View
129 RK141 31 F Japan View
130 RK142 57 M Japan View
131 RK143 66 M Japan View
132 RK144 77 F Japan View
133 RK145 63 M Japan View
134 RK146 57 F Japan View
135 RK147 50 M Japan View
136 RK148 81 M Japan View
137 RK149 71 M Japan View
138 RK150 67 M Japan View
139 RK151 67 M Japan View
140 RK152 63 M Japan View
141 RK153 74 M Japan View
142 RK154 71 M Japan View
143 RK155 78 F Japan View
144 RK156 74 M Japan View
145 RK157 46 M Japan View
146 RK159 65 M Japan View
147 RK162 77 M Japan View
148 RK163 64 F Japan View
149 RK164 69 M Japan View
150 RK165 74 M Japan View
151 RK166 67 M Japan View
152 RK167 73 M Japan View
153 RK169 73 M Japan View
154 RK170 73 M Japan View
155 RK171 78 F Japan View
156 RK172 80 F Japan View
157 RK175 78 M Japan View
158 RK176 64 M Japan View
159 RK177 59 M Japan View
160 RK178 68 F Japan View
161 RK179 64 M Japan View
162 RK180_1 62 M Japan View
163 RK180_2 62 M Japan View
164 RK181 72 M Japan View
165 RK182 65 M Japan View
166 RK183 74 M Japan View
167 RK184 64 M Japan View
168 RK185 50 M Japan View
169 RK186 58 F Japan View
170 RK187 71 M Japan View
171 RK188 54 M Japan View
172 RK189 82 M Japan View
173 RK190 80 M Japan View
174 RK191 62 F Japan View
175 RK193 58 F Japan View
176 RK194 67 M Japan View
177 RK195 73 M Japan View
178 RK196 66 M Japan View
179 RK197 81 F Japan View
180 RK198 74 F Japan View
181 RK199 73 F Japan View
182 RK200 73 M Japan View
183 RK201 72 M Japan View
184 RK202 76 F Japan View
185 RK204 83 M Japan View
186 RK205 52 M Japan View
187 RK206 83 M Japan View
188 RK207 64 M Japan View
189 RK208 60 M Japan View
190 RK209 81 M Japan View
191 RK210 76 M Japan View
192 RK211 69 F Japan View
193 RK212 76 M Japan View
194 RK213 62 M Japan View
195 RK214 68 M Japan View
196 RK215 55 M Japan View
197 RK216 68 F Japan View
198 RK217 73 M Japan View
199 RK219 70 F Japan View
200 RK220 55 M Japan View
201 RK221 70 M Japan View
202 RK222 68 F Japan View
203 RK223 75 M Japan View
204 RK224 60 M Japan View
205 RK225 70 M Japan View
206 RK226 59 M Japan View
207 RK227 62 M Japan View
208 RK228 37 M Japan View
209 RK229 63 M Japan View
210 RK230 73 F Japan View
211 RK232 79 F Japan View
212 RK233_1 76 M Japan View
213 RK233_2 76 M Japan View
214 RK234 69 M Japan View
215 RK235 77 M Japan View
216 RK236 66 F Japan View
217 RK237 74 M Japan View
218 RK240 65 M Japan View
219 RK241 49 M Japan View
220 RK243 62 F Japan View
221 RK244 81 M Japan View
222 RK245 72 M Japan View
223 RK254 70 M Japan View
224 RK256 67 M Japan View
225 RK257 68 M Japan View
226 RK258 56 M Japan View
227 RK259 62 M Japan View
228 RK260 56 M Japan View
229 RK261_1 83 M Japan View
230 RK261_2 83 M Japan View
231 RK262 62 M Japan View
232 RK263 63 M Japan View
233 RK264 75 M Japan View
234 RK265 65 M Japan View
235 RK266 72 F Japan View
236 RK268 66 M Japan View
237 RK269 74 M Japan View
238 RK270 70 M Japan View
239 RK272 78 F Japan View
240 RK275 48 F Japan View
241 RK277 78 M Japan View
242 RK278 52 M Japan View
243 RK279 69 M Japan View
244 RK280 73 M Japan View
245 RK281 65 M Japan View
246 RK282 72 M Japan View
247 RK283 53 F Japan View
248 RK284 47 F Japan View
249 RK285 49 M Japan View
250 RK287 75 F Japan View
251 RK288 75 F Japan View
252 RK289 75 M Japan View
253 RK290 75 M Japan View
254 RK297_1 72 M Japan View
255 RK298 68 M Japan View
256 RK303 76 M Japan View
257 RK304 74 M Japan View
258 RK305 74 M Japan View
259 RK306 80 M Japan View
260 RK307 61 F Japan View
261 RK308 70 F Japan View
262 RK309 56 M Japan View
263 RK310 62 F Japan View
264 RK312 66 M Japan View
265 RK316 54 F Japan View
266 RK317 73 M Japan View
267 RK326 47 M Japan View
268 RK337 72 M Japan View
269 RK338_1 77 M Japan View
270 HX004 73 F Japan View
271 HX005 66 M Japan View
272 HX009 62 F Japan View
273 HX010 58 M Japan View
274 HX011 67 F Japan View
275 HX012 58 M Japan View
276 HX013 69 F Japan View
277 HX014 56 M Japan View
278 HX015 57 M Japan View
279 HX016 40 F Japan View
280 HX017 73 M Japan View
281 HX018 57 F Japan View
282 HX019 47 F Japan View
283 HX020 60 F Japan View
284 HX021 65 M Japan View
285 HX022 49 F Japan View
286 HX023 53 M Japan View
287 HX024 66 M Japan View
288 HX025 41 M Japan View
289 HX026 66 M Japan View
290 HX027 58 M Japan View
291 HX028 58 M Japan View
292 HX029 50 M Japan View
293 HX030 66 M Japan View
294 HX031 66 M Japan View
295 HX032 59 M Japan View
296 HX033 63 M Japan View
297 HX034 62 M Japan View
298 HX035 68 M Japan View
299 HX036 56 M Japan View
300 HX037 45 M Japan View
301 RK001 56 M Japan View
302 RK002 62 M Japan View
303 RK003 71 M Japan View
304 RK004 76 M Japan View
305 RK005 66 M Japan View
306 RK006_1 69 M Japan View
307 RK006_2 69 M Japan View
308 RK007 69 M Japan View
309 RK010 46 M Japan View
310 RK012 63 M Japan View
311 RK014 47 M Japan View
312 RK015 61 M Japan View
313 RK016 63 F Japan View
314 RK018 63 M Japan View
315 RK019 74 M Japan View
316 RK020 58 M Japan View
317 RK021 81 M Japan View
318 RK022 73 F Japan View
319 RK023 74 M Japan View
320 RK024 61 M Japan View
321 RK025 78 F Japan View
322 RK026 58 M Japan View
323 RK027 73 M Japan View
324 RK028 79 F Japan View
325 RK029 61 M Japan View
326 RK030 60 M Japan View
327 RK031 53 M Japan View
328 RK032 64 M Japan View
329 RK033 77 M Japan View
330 RK034 38 M Japan View
331 RK035 63 M Japan View
332 RK036 73 M Japan View
333 RK037 69 M Japan View
334 RK038 80 F Japan View
335 RK040 83 F Japan View
336 RK041 78 M Japan View
337 RK042 57 M Japan View
338 RK043 60 M Japan View
339 RK044 70 F Japan View
340 RK046_1 64 M Japan View
341 RK046_2 64 M Japan View
342 RK047 77 F Japan View
343 RK048 69 M Japan View
344 RK049 62 M Japan View
345 RK050 65 M Japan View
346 RK051 74 M Japan View
347 RK052 76 M Japan View
348 RK053 76 M Japan View
349 RK054 75 M Japan View
350 RK055 67 M Japan View
351 RK056 74 M Japan View
352 RK057 64 M Japan View
353 RK058 56 M Japan View
354 RK059 81 M Japan View
355 RK060 71 M Japan View
356 RK061 63 M Japan View
357 RK062 74 M Japan View
358 RK063 81 F Japan View
359 RK064 78 F Japan View
360 RK065 84 F Japan View
361 RK066 72 F Japan View
362 RK067 89 M Japan View
363 RK068 32 F Japan View
364 RK069 85 F Japan View
365 RK070 80 M Japan View
366 RK071 61 F Japan View
367 RK072 68 F Japan View
368 RK073 62 M Japan View
369 RK074 69 M Japan View
370 RK075 62 M Japan View
371 RK076 67 M Japan View
372 RK077 58 M Japan View
373 RK079 51 M Japan View
374 RK080 86 F Japan View
375 RK081 72 M Japan View
376 RK082 49 M Japan View
377 RK083 71 F Japan View
378 RK084 67 F Japan View
379 RK085 65 M Japan View
380 RK086 68 M Japan View
381 RK087 59 M Japan View
382 RK088 63 M Japan View
383 RK089 70 M Japan View
384 RK090 82 F Japan View
385 RK091 76 M Japan View
386 RK092 58 M Japan View
387 RK093 52 M Japan View
388 RK095 71 F Japan View
389 RK096 65 M Japan View
390 RK098 69 F Japan View
391 RK099 78 M Japan View
392 RK100 75 F Japan View
393 RK101 71 M Japan View
394 RK102 66 M Japan View
395 RK103 67 M Japan View
396 RK104 72 M Japan View
397 RK105 69 M Japan View
398 RK106 45 F Japan View
399 RK107 57 F Japan View
400 RK108 74 M Japan View
401 RK109 84 M Japan View
402 RK110 72 M Japan View
403 RK111 57 M Japan View
404 RK112 83 M Japan View
405 RK113 53 M Japan View
406 RK115 68 F Japan View
407 RK116 78 F Japan View
408 RK117 71 F Japan View
409 RK118 61 M Japan View
410 RK119 72 F Japan View
411 RK120 60 M Japan View
412 RK121 71 F Japan View
413 RK122 75 M Japan View
414 RK123 73 F Japan View
415 RK124 67 M Japan View
416 RK125 56 M Japan View
417 RK126 58 M Japan View
418 RK128 79 M Japan View
419 RK130 42 M Japan View
420 RK131 67 M Japan View
421 RK133 49 M Japan View
422 RK134 77 M Japan View
423 RK135 73 F Japan View
424 RK136 63 M Japan View
425 RK137 74 F Japan View
426 RK138 75 F Japan View
427 RK139 71 M Japan View
428 RK140 65 M Japan View
429 RK141 31 F Japan View
430 RK142 57 M Japan View
431 RK143 66 M Japan View
432 RK144 77 F Japan View
433 RK145 63 M Japan View
434 RK146 57 F Japan View
435 RK147 50 M Japan View
436 RK148 81 M Japan View
437 RK149 71 M Japan View
438 RK150 67 M Japan View
439 RK151 67 M Japan View
440 RK152 63 M Japan View
441 RK153 74 M Japan View
442 RK154 71 M Japan View
443 RK155 78 F Japan View
444 RK156 74 M Japan View
445 RK157 46 M Japan View
446 RK159 65 M Japan View
447 RK162 77 M Japan View
448 RK163 64 F Japan View
449 RK164 69 M Japan View
450 RK165 74 M Japan View
451 RK166 67 M Japan View
452 RK167 73 M Japan View
453 RK169 73 M Japan View
454 RK170 73 M Japan View
455 RK171 78 F Japan View
456 RK172 80 F Japan View
457 RK175 78 M Japan View
458 RK176 64 M Japan View
459 RK177 59 M Japan View
460 RK178 68 F Japan View
461 RK179 64 M Japan View
462 RK180_1 62 M Japan View
463 RK180_2 62 M Japan View
464 RK181 72 M Japan View
465 RK182 65 M Japan View
466 RK183 74 M Japan View
467 RK184 64 M Japan View
468 RK185 50 M Japan View
469 RK186 58 F Japan View
470 RK187 71 M Japan View
471 RK188 54 M Japan View
472 RK189 82 M Japan View
473 RK190 80 M Japan View
474 RK191 62 F Japan View
475 RK193 58 F Japan View
476 RK194 67 M Japan View
477 RK195 73 M Japan View
478 RK196 66 M Japan View
479 RK197 81 F Japan View
480 RK198 74 F Japan View
481 RK199 73 F Japan View
482 RK200 73 M Japan View
483 RK201 72 M Japan View
484 RK202 76 F Japan View
485 RK204 83 M Japan View
486 RK205 52 M Japan View
487 RK206 83 M Japan View
488 RK207 64 M Japan View
489 RK208 60 M Japan View
490 RK209 81 M Japan View
491 RK210 76 M Japan View
492 RK211 69 F Japan View
493 RK212 76 M Japan View
494 RK213 62 M Japan View
495 RK214 68 M Japan View
496 RK215 55 M Japan View
497 RK216 68 F Japan View
498 RK217 73 M Japan View
499 RK219 70 F Japan View
500 RK220 55 M Japan View
501 RK221 70 M Japan View
502 RK222 68 F Japan View
503 RK223 75 M Japan View
504 RK224 60 M Japan View
505 RK225 70 M Japan View
506 RK226 59 M Japan View
507 RK227 62 M Japan View
508 RK228 37 M Japan View
509 RK229 63 M Japan View
510 RK230 73 F Japan View
511 RK232 79 F Japan View
512 RK233_1 76 M Japan View
513 RK233_2 76 M Japan View
514 RK234 69 M Japan View
515 RK235 77 M Japan View
516 RK236 66 F Japan View
517 RK237 74 M Japan View
518 RK240 65 M Japan View
519 RK241 49 M Japan View
520 RK243 62 F Japan View
521 RK244 81 M Japan View
522 RK245 72 M Japan View
523 RK254 70 M Japan View
524 RK256 67 M Japan View
525 RK257 68 M Japan View
526 RK258 56 M Japan View
527 RK259 62 M Japan View
528 RK260 56 M Japan View
529 RK261_1 83 M Japan View
530 RK261_2 83 M Japan View
531 RK262 62 M Japan View
532 RK263 63 M Japan View
533 RK264 75 M Japan View
534 RK265 65 M Japan View
535 RK266 72 F Japan View
536 RK268 66 M Japan View
537 RK269 74 M Japan View
538 RK270 70 M Japan View
539 RK272 78 F Japan View
540 RK275 48 F Japan View
541 RK277 78 M Japan View
542 RK278 52 M Japan View
543 RK279 69 M Japan View
544 RK280 73 M Japan View
545 RK281 65 M Japan View
546 RK282 72 M Japan View
547 RK283 53 F Japan View
548 RK284 47 F Japan View
549 RK285 49 M Japan View
550 RK287 75 F Japan View
551 RK288 75 F Japan View
552 RK289 75 M Japan View
553 RK290 75 M Japan View
554 RK297_1 72 M Japan View
555 RK298 68 M Japan View
556 RK303 76 M Japan View
557 RK304 74 M Japan View
558 RK305 74 M Japan View
559 RK306 80 M Japan View
560 RK307 61 F Japan View
561 RK308 70 F Japan View
562 RK309 56 M Japan View
563 RK310 62 F Japan View
564 RK312 66 M Japan View
565 RK316 54 F Japan View
566 RK317 73 M Japan View
567 RK326 47 M Japan View
568 RK337 72 M Japan View
569 RK338_1 77 M Japan View
570 HX004 73 F Japan View
571 HX005 66 M Japan View
572 HX009 62 F Japan View
573 HX010 58 M Japan View
574 HX011 67 F Japan View
575 HX012 58 M Japan View
576 HX013 69 F Japan View
577 HX014 56 M Japan View
578 HX015 57 M Japan View
579 HX016 40 F Japan View
580 HX017 73 M Japan View
581 HX018 57 F Japan View
582 HX019 47 F Japan View
583 HX020 60 F Japan View
584 HX021 65 M Japan View
585 HX022 49 F Japan View
586 HX023 53 M Japan View
587 HX024 66 M Japan View
588 HX025 41 M Japan View
589 HX026 66 M Japan View
590 HX027 58 M Japan View
591 HX028 58 M Japan View
592 HX029 50 M Japan View
593 HX030 66 M Japan View
594 HX031 66 M Japan View
595 HX032 59 M Japan View
596 HX033 63 M Japan View
597 HX034 62 M Japan View
598 HX035 68 M Japan View
599 HX036 56 M Japan View
600 HX037 45 M Japan View

Seq Data
GeneBank/SRA/GEO/ENA/EGA ID URL
EGAS00001000217 https://www.ebi.ac.uk/ega/studies/EGAS00001000217
EGAS00001000679 https://www.ebi.ac.uk/ega/studies/EGAS00001000679
EGAS00001001002 https://www.ebi.ac.uk/ega/studies/EGAS00001001002
https://dcc.icgc.org/releases/release_18

Literature
Item Summary
PMID 27064257
Title Whole-genome Mutational Landscape and Characterization of Noncoding and Structural Mutations in Liver Cancer
Abstract Liver cancer, which is most often associated with virus infection, is prevalent worldwide, and its underlying etiology and genomic structure are heterogeneous. Here we provide a whole-genome landscape of somatic alterations in 300 liver cancers from Japanese individuals. Our comprehensive analysis identified point mutations, structural variations (STVs), and virus integrations, in noncoding and coding regions. We discovered mutational signatures related to liver carcinogenesis and recurrently mutated coding and noncoding regions, such as long intergenic noncoding RNA genes (NEAT1 and MALAT1), promoters, CTCF-binding sites, and regulatory regions. STV analysis found a significant association with replication timing and identified known (CDKN2A, CCND1, APC, and TERT) and new (ASH1L, NCOR1, and MACROD2) cancer-related genes that were recurrently affected by STVs, leading to altered expression. These results emphasize the value of whole-genome sequencing analysis in discovering cancer driver mutations and understanding comprehensive molecular profiles of liver cancer, especially with regard to STVs and noncoding mutations.