Virus Dataset Sample Info

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Summary
Item Summary
Project 27061907
Virus Name EBV
Sample Number 13
Disease Extranodal natural killer/T__ell lymphomas (NK/TL)
Country Morocco;Tunisia;France;Madagascar

Sample
ID Sample ID Age Gender Origin Detail
1 1 23 M Morocco View
2 4 75 M France View
3 7 58 M Tunisia View
4 8 45 F France View
5 12 35 M Morocco View
6 2 45 M France View
7 3 35 F Madagascar View
8 5 49 M France View
9 10 77 M France View
10 11 76 F France View
11 13 72 M France View
12 9 79 F France View
13 6 (Clones 1-5) 73 M France View

Literature
Item Summary
PMID 27061907
Title Clonal deleted latent membrane protein 1 variants of Epstein-Barr virus are predominant in European extranodal NK/T lymphomas and disappear during successful treatment.
Abstract Extranodal natural killer/T-cell lymphomas (NK/TL), rare in Europe, are Epstein-Barr virus (EBV) associated lymphomas with poor outcomes. Here, we determined the virus type and analyzed the EBV latent membrane protein-1 (LMP1) gene sequence in NK/TL from French patients. Six clones of viral LMP1 were sequenced by Sanger technology in blood from 13 patients before treatment with an l-asparaginase based regimen and, for 8 of them, throughout the treatment. Blood LMP1 sequences from 21 patients without any known malignancy were tested as controls. EBV Type A was identified for 11/13 patients and for all controls. Before treatment, a clonal LMP1 gene containing a 30 bp deletion (del30) was found in 46.1% of NK/TL and only in 4.8% of controls. Treatment was less effective in these patients who died more rapidly than the others. Patients with a deleted strain evolving toward a wild-type strain during treatment reached complete remission. The LMP1 gene was sequenced by highly sensitive next-generation sequencing technology in five NK/TL nasopharyngeal biopsies, two of them originating from the previous patients. Del30 was present in 100% of the biopsies; two viruses at least coexisted in three biopsies. These results suggest that del30 may be associated with poor prognosis NK/TL and that strain evolution could be used as a potential marker to monitor treatment.