Virus Dataset Sample Info

> Dataset: 26301494 Search Result


Summary
Item Summary
Project 26301494
Virus Name AAV2
Sample Number 11
Disease Hepatocellular carcinomas (HCCs)
Country Europe;Asia
Data Link https://www.ncbi.nlm.nih.gov/nuccore/?term=KT258720%3AKT258730%5Bpacc%5D
https://www.ebi.ac.uk/ega/studies/EGAS00001000217
https://www.ebi.ac.uk/ega/studies/EGAS00001000679
https://www.ebi.ac.uk/ega/studies/EGAS00001001002

Sample
ID Sample ID Age Gender Origin Detail
1 CHC1602T 71 M Europe View
2 CHC2557T 70 M Europe View
3 CHC2112T 48 F Europe View
4 CHC2128T 53 F Europe View
5 CHC2206T 90 M Europe View
6 CHC313T 43 F Europe View
7 CHC2208T 53 M Europe View
8 CHC1591T 60 M Europe View
9 CHC2141T 73 M Europe View
10 CHC1185T 53 M Asia View
11 CHC985T 55 M Europe View

Seq Data
GeneBank/SRA/GEO/ENA/EGA ID URL
KT258720 http://www.ncbi.nlm.nih.gov/nuccore/?term=KT258720
KT258721 http://www.ncbi.nlm.nih.gov/nuccore/?term=KT258721
KT258722 http://www.ncbi.nlm.nih.gov/nuccore/?term=KT258722
KT258723 http://www.ncbi.nlm.nih.gov/nuccore/?term=KT258723
KT258724 http://www.ncbi.nlm.nih.gov/nuccore/?term=KT258724
KT258725 http://www.ncbi.nlm.nih.gov/nuccore/?term=KT258725
KT258726 http://www.ncbi.nlm.nih.gov/nuccore/?term=KT258726
KT258727 http://www.ncbi.nlm.nih.gov/nuccore/?term=KT258727
KT258728 http://www.ncbi.nlm.nih.gov/nuccore/?term=KT258728
KT258729 http://www.ncbi.nlm.nih.gov/nuccore/?term=KT258729
KT258730 http://www.ncbi.nlm.nih.gov/nuccore/?term=KT258730
EGAS00001000217 https://www.ebi.ac.uk/ega/studies/EGAS00001000217
EGAS00001000679 https://www.ebi.ac.uk/ega/studies/EGAS00001000679
EGAS00001001002 https://www.ebi.ac.uk/ega/studies/EGAS00001001002

Literature
Item Summary
PMID 26301494
Title Recurrent AAV2-related Insertional Mutagenesis in Human Hepatocellular Carcinomas
Abstract Hepatocellular carcinomas (HCCs) are liver tumors related to various etiologies, including alcohol intake and infection with hepatitis B (HBV) or C (HCV) virus. Additional risk factors remain to be identified, particularly in patients who develop HCC without cirrhosis. We found clonal integration of adeno-associated virus type 2 (AAV2) in 11 of 193 HCCs. These AAV2 integrations occurred in known cancer driver genes, namely CCNA2 (cyclin A2; four cases), TERT (telomerase reverse transcriptase; one case), CCNE1 (cyclin E1; three cases), TNFSF10 (tumor necrosis factor superfamily member 10; two cases) and KMT2B (lysine-specific methyltransferase 2B; one case), leading to overexpression of the target genes. Tumors with viral integration mainly developed in non-cirrhotic liver (9 of 11 cases) and without known risk factors (6 of 11 cases), suggesting a pathogenic role for AAV2 in these patients. In conclusion, AAV2 is a DNA virus associated with oncogenic insertional mutagenesis in human HCC.