Virus Dataset Sample Info

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Summary
Item Summary
Project 23658444
Virus Name HBV
Sample Number 26
Disease occult hepatitis B infection (OBI)
Country Malaysia

Sample
ID Sample ID Age Gender Origin Detail
1 M38 30 M Malaysia View
2 M86 19 F Malaysia View
3 M88 23 M Malaysia View
4 M90 22 F Malaysia View
5 M92 49 M Malaysia View
6 M95 26 M Malaysia View
7 E3476 NA NA Egypt View
8 E3789 NA NA Egypt View
9 HK01556 47 M China View
10 HK3110 49 F China View
11 HK3475 51 M China View
12 HK6794 59 M China View
13 HK6921 50 M China View
14 HK8442 53 M China View
15 HK8663 53 M China View
16 R84 44 M Italy View
17 TW0498 46 M China View
18 TW2256 30 M China View
19 TW3437 49 F China View
20 TW4576 55 M China View
21 TW5004 63 F China View
22 TW6083 62 M China View
23 TW6639 55 M China View
24 TW8964 30 M China View
25 TW9015 47 M China View
26 TW9331 54 M China View

Literature
Item Summary
PMID 23658444
Title Specific amino acid substitutions in the S protein prevent its excretion in vitro and may contribute to occult hepatitis B virus infection.
Abstract Occult hepatitis B virus (HBV) infection (OBI) is defined as low plasma level of HBV DNA with undetectable HBV surface antigen (HBsAg) outside the preseroconversion window period. The mechanisms leading to OBI remain largely unknown. The potential role of specific amino acid substitutions in the S protein from OBI in HBsAg production and excretion was examined in vitro. HBsAg was quantified in culture supernatants and cell extracts of HuH-7 cells transiently transfected with plasmids containing the S gene of eight HBsAg(+) controls and 18 OBI clones. The intracellular (IC)/extracellular (EC) HBsAg production ratio was approximately 1.0 for the majority of controls. Three IC/EC HBsAg patterns were observed in OBI strains clones: pattern 1, an IC/EC ratio of 1.0, was found in 5/18 OBI clones, pattern 2, detectable IC but low or undetectable EC HBsAg (IC/EC, 7.0 to 800), was found in 6/18 OBIs, and pattern 3, low or undetectable IC and EC HBsAg, was found in 7/18 clones. Intracellular immunofluorescence staining showed that in pattern 2, HBsAg was concentrated around the nucleus, suggesting retention in the endoplasmic reticulum. The substitution M75T, Y100S, or P178R was present in 4/6 pattern 2 OBI clones. Site-directed-mutagenesis-corrected mutations reversed HBsAg excretion to pattern 1 and, when introduced into a control clone, induced pattern 2 except for Y100S. In a control and several OBIs, variants of a given quasispecies expressed HBsAg according to different patterns. However, the P178R substitution present in all cloned sequences of two OBI strains may contribute significantly to the OBI phenotype.