Virus Dataset Sample Info

> Dataset: 18202256 Search Result


Summary
Item Summary
Project 18202256
Virus Name MCV
Sample Number 12
Disease Merkel cell carcinoma (MCC)
Country United States
Data Link https://www.ncbi.nlm.nih.gov/nuccore/EU375803
https://www.ncbi.nlm.nih.gov/nuccore/EU375804

Sample
ID Sample ID Age Gender Origin Detail
1 1 84 M United States View
2 2 79 M United States View
3 2 79 M United States View
4 3 79 M United States View
5 4 57 M United States View
6 5 77 M United States View
7 6 38 M United States View
8 7 56 M United States View
9 7 56 M United States View
10 8 58 F United States View
11 9 58 M United States View
12 10 58 M United States View

Seq Data
GeneBank/SRA/GEO/ENA/EGA ID URL
EU375803 https://www.ncbi.nlm.nih.gov/nuccore/EU375803
EU375804 https://www.ncbi.nlm.nih.gov/nuccore/EU375804

Literature
Item Summary
PMID 18202256
Title Clonal Integration of a Polyomavirus in Human Merkel Cell Carcinoma
Abstract Merkel cell carcinoma (MCC) is a rare but aggressive human skin cancer that typically affects elderly and immunosuppressed individuals, a feature suggestive of an infectious origin. We studied MCC samples by digital transcriptome subtraction and detected a fusion transcript between a previously undescribed virus T antigen and a human receptor tyrosine phosphatase. Further investigation led to identification and sequence analysis of the 5387-base-pair genome of a previously unknown polyomavirus that we call Merkel cell polyomavirus (MCV or MCPyV). MCV sequences were detected in 8 of 10 (80%) MCC tumors but only 5 of 59 (8%) control tissues from various body sites and 4 of 25 (16%) control skin tissues. In six of eight MCV-positive MCCs, viral DNA was integrated within the tumor genome in a clonal pattern, suggesting that MCV infection and integration preceded clonal expansion of the tumor cells. Thus, MCV may be a contributing factor in the pathogenesis of MCC.